VPTissue Reference Manual
Class Index
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  A  
CheckableTreeModel (SimShell::Gui)   IWorkspaceFactory (SimShell::Ws)   PTreeEditorWindow (SimShell::Gui)   Subject (SimPT_Sim::Util)   
  D  
  L  
PTreeMenu (SimShell::Gui)   Subject< E, std::weak_ptr< const void > > (SimPT_Sim::Util)   
AuxinGrowth (SimPT_Default::CellChemistry)   PTreeModel (SimShell::Gui)   SessionController (SimShell::Gui::Controller)   
AuxinPIN1 (SimPT_Default::CellColor)   DHelper (SimPT_Default::DeltaHamiltonian)   ListSweep (SimPT_Parex)   PTreeView (SimShell::Gui)   SaveChangesDialog (SimShell::Gui)   
Auxin (SimPT_Default::CellDaughters)   DirectedNormal (SimPT_Default::MoveGenerator)   LogViewer (SimPT_Shell)   WorkspaceQtModel::Item::PR (SimShell::Gui)   SubjectNode (SimShell::Viewer)   
Auxin (SimPT_Default::CellHousekeep)   DirectedUniform (SimPT_Default::MoveGenerator)   LogWindowViewer (SimPT_Shell)   WorkspaceWizard::PathPage (SimShell::Gui)   SubjectViewerNodeWrapper (SimShell::Viewer)   
AuxinGrowth (SimPT_Default::CellHousekeep)   DiamondTile (SimPT_Editor)   LogWindow (SimShell::Gui)   PTreeQtState (SimShell)   
  T  
AreaThresholdBased (SimPT_Default::CellSplit)   DeltaHamiltonianTag (SimPT_Sim)   
  M  
PreferencesChanged (SimShell::Ws::Event)   
AuxinGrowth (SimPT_Default::CellSplit)   DurstenfeldShuffle (SimPT_Sim)   ProjectChanged (SimShell::Ws::Event)   TestCoupling (SimPT_Default::CellChemistry)   
AuxinGrowth (SimPT_Default::CellToCellTransport)   WorkspaceWizard::DonePage (SimShell::Gui)   ModeManager (Modes)   IWorkspace::ProjectMapEntry (SimShell::Ws)   TipGrowth (SimPT_Default::CellColor)   
AuxinGrowth (SimPT_Default::WallChemistry)   
  E  
Meinhardt (SimPT_Default::CellChemistry)   Preferences (SimShell::Ws)   TestCoupling (SimPT_Default::CellToCellTransport)   
ArrowItem (SimPT_Shell)   Meinhardt (SimPT_Default::CellColor)   Project (SimShell::Ws)   TestCoupling_I (SimPT_Default::CellToCellTransportBoundary)   
AppCustomizer (SimPT_Shell::Gui)   ElasticWall (SimPT_Default::DeltaHamiltonian)   Meinhardt (SimPT_Default::CellHousekeep)   
  Q  
TestCoupling_II (SimPT_Default::CellToCellTransportBoundary)   
AreaMoment (SimPT_Sim)   ElasticWall (SimPT_Default::Hamiltonian)   Meinhardt (SimPT_Default::CellToCellTransport)   Transport (SimPT_Default::TimeEvolver)   
AttributeContainer (SimPT_Sim)   EditableCellItem (SimPT_Editor)   Maxwell (SimPT_Default::DeltaHamiltonian)   QAbstractItemModel   Tile (SimPT_Editor)   
AttributeStore (SimPT_Sim)   EditableEdgeItem (SimPT_Editor)   ModifiedGC (SimPT_Default::DeltaHamiltonian)   QDialog   TissueEditor (SimPT_Editor)   
AppController (SimShell::Gui::Controller)   EditableItem (SimPT_Editor)   Maxwell (SimPT_Default::Hamiltonian)   QDockWidget   TissueGraphicsView (SimPT_Editor)   
  B  
EditableMesh (SimPT_Editor)   ModifiedGC (SimPT_Default::Hamiltonian)   QGraphicsEllipseItem   TissueSlicer (SimPT_Editor)   
EditableNodeItem (SimPT_Editor)   Meinhardt (SimPT_Default::WallChemistry)   QGraphicsItem   TransformationWidget (SimPT_Editor)   
Blad (SimPT_Blad::CellChemistry)   EditControlLogic (SimPT_Editor)   MeshDrawer (SimPT_Shell)   QGraphicsItemGroup   TriangularTile (SimPT_Editor)   
Blad (SimPT_Blad::CellColor)   EditorActions (SimPT_Editor)   MBMBuilder (SimPT_Sim)   QGraphicsLineItem   TaskOverview (SimPT_Parex)   
Blad (SimPT_Blad::CellDaughters)   Exploration (SimPT_Parex)   Mesh (SimPT_Sim)   QGraphicsPathItem   TemplateFilePage (SimPT_Parex)   
Blad (SimPT_Blad::CellHousekeep)   ExplorationManager (SimPT_Parex)   MeshCheck (SimPT_Sim)   QGraphicsPolygonItem   TextViewer (SimPT_Shell)   
Blad (SimPT_Blad::CellSplit)   ExplorationProgress (SimPT_Parex)   MeshGeometry (SimPT_Sim)   QGraphicsView   TextViewerPreferences (SimPT_Shell)   
Blad (SimPT_Blad::CellToCellTransport)   ExplorationSelection (SimPT_Parex)   MeshState (SimPT_Sim)   QMainWindow   TimeStepPostfixFormat (SimPT_Shell)   
BasicPIN (SimPT_Default::CellDaughters)   ExplorationTask (SimPT_Parex)   MeshTopology (SimPT_Sim)   QMenu   Timeable (SimPT_Sim::ClockMan)   
BasicAuxin (SimPT_Default::CellHousekeep)   ExplorationWizard (SimPT_Parex)   MoveGeneratorTag (SimPT_Sim)   QMenuBar   TimeStamp (SimPT_Sim::ClockMan)   
Basic (SimPT_Default::CellToCellTransport)   ConversionList::EntryType (SimPT_Shell)   NodeMover::MetropolisInfo (SimPT_Sim)   QObject   TimeData (SimPT_Sim)   
Basic (SimPT_Default::WallChemistry)   ExporterFormat (SimPT_Shell)   NodeMover::MoveInfo (SimPT_Sim)   QSortFilterProxyModel   TimeEvolverTag (SimPT_Sim)   
BackgroundDialog (SimPT_Editor)   Edge (SimPT_Sim)   MyDockWidget (SimShell::Gui)   QTcpServer   TimeSlicer (SimPT_Sim)   
BitmapFormat (SimPT_Shell)   ExchangeCoupler (SimPT_Sim)   MyFindDialog (SimShell::Gui)   QTreeView   Tissue (SimPT_Sim)   
BitmapGraphicsExporter (SimPT_Shell)   Exception (SimPT_Sim::Util)   MyGraphicsView (SimShell::Gui)   QUndoCommand   TransportEquations (SimPT_Sim)   
BitmapGraphicsPreferences (SimPT_Shell)   EnabledActions (SimShell::Gui)   MyTreeView (SimShell::Gui)   QWidget   
  U  
  C  
ExportActions (SimShell::Gui::ProjectActions)   PTreeModel::MoveRowsCommand (SimShell::Gui)   QWizard   
PTreeModel::EditDataCommand (SimShell::Gui)   MergedPreferencesChanged (SimShell::Ws::Event)   QWizardPage   UndoStack (SimPT_Editor)   
ComponentFactory (SimPT_Blad)   PTreeModel::EditKeyCommand (SimShell::Gui)   MergedPreferences (SimShell::Ws)   QtPreferences (SimPT_Shell)   Utils (SimPT_Sim::ClockMan)   
ChemBlue (SimPT_Default::CellColor)   WorkspaceWizard::ExistingPage (SimShell::Gui)   
  N  
QtViewer (SimPT_Shell)   
  V  
ChemGreen (SimPT_Default::CellColor)   ISession::ExporterType (SimShell::Session)   
  R  
ComponentFactory (SimPT_Default)   
  F  
NoOp (SimPT_Default::CellChemistry)   VLeaf (SimPT_Default::TimeEvolver)   
CopyAttributesDialog (SimPT_Editor)   NoOp (SimPT_Default::CellDaughters)   RectangularTile (SimPT_Editor)   VPTissue (SimPT_Default::TimeEvolver)   
Client (SimPT_Parex)   FileExploration (SimPT_Parex)   NoOp (SimPT_Default::CellHousekeep)   RegularGeneratorDialog (SimPT_Editor)   VoronoiGeneratorDialog (SimPT_Editor)   
ClientHandler (SimPT_Parex)   FilesPage (SimPT_Parex)   NoOp (SimPT_Default::CellSplit)   RegularTiling (SimPT_Editor)   VoronoiTesselation (SimPT_Editor)   
ClientProtocol (SimPT_Parex)   FileConversion (SimPT_Shell)   NoOp (SimPT_Default::CellToCellTransport)   RangeSweep (SimPT_Parex)   VectorFormat (SimPT_Shell)   
Connection (SimPT_Parex)   FileConverterFormats (SimPT_Shell)   NoOp (SimPT_Default::WallChemistry)   RootViewerNode (SimPT_Shell::Viewer)   VectorGraphicsExporter (SimPT_Shell)   
CliController (SimPT_Shell)   FileViewer (SimPT_Shell)   NodeAdvertiser (SimPT_Parex)   RandomEngine (SimPT_Sim)   VectorGraphicsPreferences (SimPT_Shell)   
CliConverterTask (SimPT_Shell)   FileViewerPreferences (SimPT_Shell)   NodeProtocol (SimPT_Parex)   RevisionInfo (SimPT_Sim::Util)   ViewerActions (SimShell::Gui::ProjectActions)   
CliSimulationTask (SimPT_Shell)   FunctionMap (SimPT_Sim::Util)   NodeItem (SimPT_Shell)   PTreeModel::RemoveRowsCommand (SimShell::Gui)   ViewerDockWidget (SimShell::Gui)   
CliWorkspaceManager (SimPT_Shell)   WorkspaceQtModel::Item::FI (SimShell::Gui)   NeighborNodes (SimPT_Sim)   Register (SimShell::Viewer)   ViewerWindow (SimShell::Gui)   
ConversionList (SimPT_Shell)   FileSystemWatcher (SimShell::Ws::Util)   Node (SimPT_Sim)   Register< true > (SimShell::Viewer)   ViewerEvent (SimShell::Viewer::Event)   
ConverterWindow (SimPT_Shell)   
  G  
NodeAttributes (SimPT_Sim)   
  S  
ViewerNode (SimShell::Viewer)   
CoupledCliController (SimPT_Shell)   NodeInserter (SimPT_Sim)   
  W  
CsvExporter (SimPT_Shell)   Geometric (SimPT_Default::CellHousekeep)   NodeMover (SimPT_Sim)   SmithPhyllotaxis (SimPT_Default::CellChemistry)   
CsvFormat (SimPT_Shell)   Geometric (SimPT_Default::CellSplit)   NewProjectDialog (SimShell::Gui)   Source (SimPT_Default::CellChemistry)   Wortel (SimPT_Default::CellChemistry)   
CsvGzExporter (SimPT_Shell)   Grow (SimPT_Default::TimeEvolver)   
  O  
SimplyRed (SimPT_Default::CellColor)   WrapperModel (SimPT_Default::CellChemistry)   
CsvGzFormat (SimPT_Shell)   GraphicsPreferences (SimPT_Shell)   Size (SimPT_Default::CellColor)   Wortel (SimPT_Default::CellColor)   
CliWorkspace (SimPT_Shell::Ws)   GuiWorkspace (SimPT_Shell::Ws)   OdeintFactories0Map (SimPT_Sim)   SmithPhyllotaxis (SimPT_Default::CellDaughters)   Wortel (SimPT_Default::CellDaughters)   
Compressor (SimPT_Shell::Ws::Util)   GeoData (SimPT_Sim)   OdeintFactories2Map (SimPT_Sim)   SmithPhyllotaxis (SimPT_Default::CellHousekeep)   WrapperModel (SimPT_Default::CellDaughters)   
CBMBuilder (SimPT_Sim)   Geom (SimPT_Sim)   OdeintFactory0 (SimPT_Sim)   SmithPhyllotaxis (SimPT_Default::CellToCellTransport)   Wortel (SimPT_Default::CellHousekeep)   
Cell (SimPT_Sim)   
  H  
OdeintFactory2 (SimPT_Sim)   Source (SimPT_Default::CellToCellTransport)   WrapperModel (SimPT_Default::CellHousekeep)   
CellAttributes (SimPT_Sim)   OdeintTraits (SimPT_Sim)   StandardNormal (SimPT_Default::MoveGenerator)   Wortel (SimPT_Default::CellSplit)   
CellChemistryTag (SimPT_Sim)   HHelper (SimPT_Default::Hamiltonian)   
  P  
StandardUniform (SimPT_Default::MoveGenerator)   WrapperModel (SimPT_Default::CellSplit)   
CellColorTag (SimPT_Sim)   Housekeep (SimPT_Default::TimeEvolver)   SelectByIDWidget (SimPT_Editor)   Wortel (SimPT_Default::CellToCellTransport)   
CellDaughtersTag (SimPT_Sim)   HousekeepGrow (SimPT_Default::TimeEvolver)   ParexClientMode (Modes)   SliceItem (SimPT_Editor)   WrapperModel (SimPT_Default::CellToCellTransport)   
CellDivider (SimPT_Sim)   HexagonalTile (SimPT_Editor)   ParexNodeMode (Modes)   SendPage (SimPT_Parex)   WorkerNode (SimPT_Parex)   
CellHousekeeper (SimPT_Sim)   Hdf5Exporter (SimPT_Shell)   ParexServerMode (Modes)   Server (SimPT_Parex)   WorkerPool (SimPT_Parex)   
CellHousekeepTag (SimPT_Sim)   Hdf5File (SimPT_Shell)   PreferencesType   ServerClientProtocol (SimPT_Parex)   WorkerRepresentative (SimPT_Parex)   
CellSplitTag (SimPT_Sim)   Hdf5Format (SimPT_Shell)   PINFlux (SimPT_Default::CellChemistry)   ServerDialog (SimPT_Parex)   WallItem (SimPT_Shell)   
CellToCellTransportBoundaryTag (SimPT_Sim)   Hdf5Viewer (SimPT_Shell)   PINFlux2 (SimPT_Default::CellChemistry)   ServerInfo (SimPT_Parex)   Workspace (SimPT_Shell::Ws)   
CellToCellTransportTag (SimPT_Sim)   HamiltonianTag (SimPT_Sim)   Perimeter (SimPT_Default::CellDaughters)   ServerNodeProtocol (SimPT_Parex)   WorkspaceFactory (SimPT_Shell::Ws)   
ChainHull (SimPT_Sim)   HasUnsavedChanges (SimShell::Gui)   PIN (SimPT_Default::CellDaughters)   SimResult (SimPT_Parex)   Wall (SimPT_Sim)   
ClockCLib (SimPT_Sim::ClockMan)   HasUnsavedChangesDummy (SimShell::Gui)   Plain (SimPT_Default::CellToCellTransport)   SimTask (SimPT_Parex)   WallAttributes (SimPT_Sim)   
ClockTraits (SimPT_Sim::ClockMan)   HasUnsavedChangesPrompt (SimShell::Gui)   PlainGC (SimPT_Default::DeltaHamiltonian)   Simulator (SimPT_Parex)   WallChemistryTag (SimPT_Sim)   
CumulativeRecords (SimPT_Sim::ClockMan)   
  I  
PlainGC (SimPT_Default::Hamiltonian)   StartPage (SimPT_Parex)   WorkspaceController (SimShell::Gui::Controller)   
ComponentFactoryBase (SimPT_Sim)   PolygonUtils (SimPT_Editor)   Status (SimPT_Parex)   WorkspaceQtModel (SimShell::Gui)   
ComponentFactoryProxy (SimPT_Sim)   ISweep (SimPT_Parex)   PTreePanels (SimPT_Editor)   SimSession (SimPT_Shell::Session)   WorkspaceQtModel::Item::WS (SimShell::Gui)   
ComponentTraits (SimPT_Sim)   IConverterFormat (SimPT_Shell)   ParameterExploration (SimPT_Parex)   SimSessionCoupled (SimPT_Shell::Session)   WorkspaceView (SimShell::Gui)   
ComponentTraits< CellChemistryTag > (SimPT_Sim)   ISimSession (SimPT_Shell::Session)   ParamPage (SimPT_Parex)   SimWorker (SimPT_Shell::Session)   WorkspaceWizard (SimShell::Gui)   
ComponentTraits< CellColorTag > (SimPT_Sim)   IndividualRecords (SimPT_Sim::ClockMan)   PathPage (SimPT_Parex)   StepFilterProxyModel (SimPT_Shell)   WorkspaceChanged (SimShell::Ws::Event)   
ComponentTraits< CellDaughtersTag > (SimPT_Sim)   ICoupler (SimPT_Sim)   Protocol (SimPT_Parex)   StepSelection (SimPT_Shell)   IProject::WidgetCallback (SimShell::Ws)   
ComponentTraits< CellHousekeepTag > (SimPT_Sim)   Info (SimPT_Sim::RandomEngineType)   PTreeEditor (SimPT_Shell::Gui)   StartupFileBase (SimPT_Shell::Ws)   Workspace (SimShell::Ws)   
ComponentTraits< CellSplitTag > (SimPT_Sim)   IFactory (SimShell::Gui)   PlyExporter (SimPT_Shell)   StartupFileHdf5 (SimPT_Shell::Ws)   
  X  
ComponentTraits< CellToCellTransportBoundaryTag > (SimPT_Sim)   IHasPTreeState (SimShell::Gui)   PlyFormat (SimPT_Shell)   StartupFilePtree (SimPT_Shell::Ws)   
ComponentTraits< CellToCellTransportTag > (SimPT_Sim)   PTreeModel::InsertRowsCommand (SimShell::Gui)   PreferencesObserver (SimPT_Shell)   StartupFileXml (SimPT_Shell::Ws)   XmlExporter (SimPT_Shell)   
ComponentTraits< DeltaHamiltonianTag > (SimPT_Sim)   WorkspaceWizard::InitPage (SimShell::Gui)   PTreeComparison (SimPT_Shell)   StartupFileXmlGz (SimPT_Shell::Ws)   XmlFormat (SimPT_Shell)   
ComponentTraits< HamiltonianTag > (SimPT_Sim)   InstallDirs (SimShell)   Project (SimPT_Shell::Ws)   Stopwatch (SimPT_Sim::ClockMan)   XmlGzExporter (SimPT_Shell)   
ComponentTraits< MoveGeneratorTag > (SimPT_Sim)   ISession (SimShell::Session)   ChainHull::Point (SimPT_Sim)   SegmentedVector (SimPT_Sim::Container)   XmlGzFormat (SimPT_Shell)   
ComponentTraits< TimeEvolverTag > (SimPT_Sim)   InitNotifier (SimShell::Viewer)   PBMBuilder (SimPT_Sim)   SVIterator (SimPT_Sim::Container)   XmlWriterSettings (SimPT_Sim::Util)   
ComponentTraits< WallChemistryTag > (SimPT_Sim)   IViewerNode (SimShell::Viewer)   PtreeTissueBuilder (SimPT_Sim)   SimEvent (SimPT_Sim::Event)   
  e  
CircularIterator (SimPT_Sim::Container::Impl_)   IViewerNodeWithParent (SimShell::Viewer)   PTreeFile (SimPT_Sim::Util)   Sim (SimPT_Sim)   
CoreData (SimPT_Sim)   IFile (SimShell::Ws)   PTreeUtils (SimPT_Sim::Util)   SimInterface (SimPT_Sim)   enable_shared_from_this (std)   
CoupledSim (SimPT_Sim)   IPreferences (SimShell::Ws)   ProjectController (SimShell::Gui::Controller)   SimState (SimPT_Sim)   
  i  
CouplerFactories (SimPT_Sim)   IProject (SimShell::Ws)   PanAndZoomView (SimShell::Gui)   SimWrapper (SimPT_Sim)   
CSRMatrix (SimPT_Sim)   IUserData (SimShell::Ws)   PTreeContainer (SimShell::Gui)   SimWrapperResult (SimPT_Sim)   iterator (std)   
CoupledSimEvent (SimPT_Sim::Event)   IWorkspace (SimShell::Ws)   PTreeContainerPreferencesObserver (SimShell::Gui)   SimWrapperResult< void > (SimPT_Sim)   
  s  
simPTCLIMode (Modes)   
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