File List

Here is a list of all documented files with brief descriptions:

AppController.cpp	AppController implementation
AppController.h	AppController header
AppCustomizer.cpp	Implementation of AppCustomizer
AppCustomizer.h	Interface for AppCustomizer
AreaMoment.h	Interface/Implementation for AreaMoment
AreaThresholdBased.cpp	CellSplit for AreaThresholdBased model
AreaThresholdBased.h	CellSplit for AreaThresholdBased model
array3.h	Extending std with arithmetic for std::array<double, 3>
ArrowItem.cpp	Implementation for ArrowItem
ArrowItem.h	Interface for ArrowItem
AttributeContainer.cpp	Definition of AttributeContainer
AttributeContainer.h	Interface of AttributeContainer
AttributeStore.cpp	Implementation for AttributeStore
AttributeStore.h	Interface of AttributeStore
cell_daughters/Auxin.cpp	CellDaughters component for Auxin model
cell_housekeep/Auxin.cpp	CellHousekeep::Auxin implementation file
cell_daughters/Auxin.h	Interface for CellDaughters::Auxin
cell_housekeep/Auxin.h	CellHousekeep::Auxin header file
cell2cell_transport/AuxinGrowth.cpp	CellToCellTransport for AuxinGrowth model
cell_chemistry/AuxinGrowth.cpp	CellChemistry for AuxinGrowth model
cell_housekeep/AuxinGrowth.cpp	CellHousekeep::AuxinGrowth implementation file
cell_split/AuxinGrowth.cpp	CellSplit for AuxinGrowth model
wall_chemistry/AuxinGrowth.cpp	WallChemistry for AuxinGrowth model
cell2cell_transport/AuxinGrowth.h	CellToCellTransport for AuxinGrowth model
cell_chemistry/AuxinGrowth.h	CellChemistry for AuxinGrowth model
cell_housekeep/AuxinGrowth.h	CellHousekeep::AuxinGrowth header file
cell_split/AuxinGrowth.h	CellSplit for AuxinGrowth model
wall_chemistry/AuxinGrowth.h	WallChemistry for AuxinGrowth model
AuxinPIN1.cpp	Implementation for AuxinPIN1 colorizer
AuxinPIN1.h	Header for AuxinPIN1 colorizer
BackgroundDialog.cpp	Implementation for BackgroundDialog
BackgroundDialog.h	Interface for BackgroundDialog
cell2cell_transport/Basic.cpp	Basic CellToCellTransport component
wall_chemistry/Basic.cpp	Basic WallChemistry component
cell2cell_transport/Basic.h	Basic CellToCellTransport component
wall_chemistry/Basic.h	Basic WallChemistry component
BasicAuxin.cpp	CellHousekeep for BasicAuxin model
BasicAuxin.h	CellHousekeep::BasicAuxin header file
BasicPIN.cpp	CellDaughters::BasicPIN implementation file
BasicPIN.h	Interface for CellDaughters::BasicPIN
BitmapFormat.cpp	Implementation of bitmap graphics converter format
BitmapFormat.h	Interface of bitmap graphics converter format
BitmapGraphicsExporter.cpp	Implementation for BitmapGraphicsExporter
BitmapGraphicsExporter.h	Interface for BitmapGraphicsExporter
BitmapGraphicsPreferences.h	Interface/Implementation for BitmapGraphicsPreferences
cell2cell_transport/Blad.cpp	CellToCellTransport for Blad model
cell_chemistry/Blad.cpp	CellChemistry for Blad model
cell_color/Blad.cpp	CellColor for Blad model
cell_daughters/Blad.cpp	CellDaughters for Blad model
cell_housekeep/Blad.cpp	CellHousekeep for Blad model
cell_split/Blad.cpp	CellSplit for Blad model
cell2cell_transport/Blad.h	CellToCellTransport for Blad model
cell_chemistry/Blad.h	CellChemistry for Blad model
cell_color/Blad.h	CellColor for Blad model
cell_daughters/Blad.h	CellDaughters component of Blad model
cell_housekeep/Blad.h	CellHousekeep for Blad model
cell_split/Blad.h	CellSplit for Blad model
BoundaryType.h	BoundaryType enumeration class
CBMBuilder.cpp	Implementation of CBMBBuilder
CBMBuilder.h	Interface of CBMBuilder
Cell.cpp	Implementation for Cell
Cell.h	Interface for Cell
CellAttributes.cpp	Implementation for CellAttributes
CellAttributes.h	Interface for CellAttributes
CellDivider.cpp	Implementation of CellDivider
CellDivider.h	Interface for CellDivider
CellHousekeeper.cpp	Implementation for CellHousekeeper
CellHousekeeper.h	Interface for CellHousekeeper
CellType.h	Declaration of CellType
ChainHull.cpp	Implementation of ChainHull
ChainHull.h	Interface for ChainHull
CheckableTreeModel.cpp	CheckableTreeModel implementation
CheckableTreeModel.h	CheckableTreeModel header
ChemBlue.cpp	ChemBlue colorizer
ChemBlue.h	ChemBlue colorizer
ChemGreen.cpp	Implementation for CellColor::ChemGreen
ChemGreen.h	CellColor ChemGreen scheme (use black background)
circular_iterator.h	Combo header for circular iterator
CircularIterator.h	CircularIterator class and helper functions
CircularIteratorImpl.h	Circular iterator implementation
CliController.cpp	Implementation for CliController
CliController.h	Interface for CliController
CliConverterTask.h	Interface/Implementation for CliConverterTask
Client.cpp	Implementation for Client
Client.h	Interface for Client
ClientHandler.cpp	Implementation of ClientHandler
ClientHandler.h	Interface for ClientHandler
ClientProtocol.cpp	Implementation of ClientProtocol
ClientProtocol.h	Interface for ClientProtocol
CliSimulationTask.h	Interface/Implementation for CliTask
CliWorkspace.cpp	Implementation for Cli Workspace
CliWorkspace.h	Interface for workspace
CliWorkspaceManager.cpp	Implementation for CliWorkspacemanager
CliWorkspaceManager.h	Interface for CliWorkspaceManager
clock_man.h	Utility header file for clock related classes
ClockCLib.h	Interface/Implementation for ClockCLib
ClockTraits.h	Interface for ClockTraits
Blad/components/ComponentFactory.cpp	Component factory for the Blad model group
Default/components/ComponentFactory.cpp	Component factory for SimPT_Default model group
Blad/components/ComponentFactory.h	Component factory for the Blad model group
Default/components/ComponentFactory.h	Component factory for SimPT_Default model group
ComponentFactoryBase.h	Interface of Component Factory
ComponentFactoryProxy.cpp	Proxy for dealing with the factories
ComponentFactoryProxy.h	Proxy for dealing with the factories
ComponentInterfaces.h	Interface of Model Components
ComponentTraits.h	Model component
Compressor.cpp	Implementation for Compressor
Compressor.h	Interface for Compressor
Connection.cpp	Implementation for Connection
Connection.h	Interface for Connection
constants.h	Math constants
ConstCircularIterator.h	ConstCircularIterator class and helper functions
ConversionList.cpp	Implementation for ConversionList
ConversionList.h	Interface for ConversionList
ConverterWindow.cpp	Implementation for ConverterWindow
ConverterWindow.h	Interface for ConverterWindow
CopyAttributesDialog.cpp	Implementation for CopyAttributesDialog
CopyAttributesDialog.h	Interface for CopyAttributesDialog
CoreData.h	Core data used during model execution
CoupledCliController.cpp	Implementation for CoupledCliController
CoupledCliController.h	Interface for CoupledCliController
CoupledSim.cpp	Implementation for CoupledSim
CoupledSim.h	Interface for CoupledSim
CoupledSimEvent.h	Definition for CoupledSimEvent
CouplerFactories.cpp	Implementation for CouplerFactories
CouplerFactories.h	Interface for CouplerFactories
CSRMatrix.h	Data strucuture for generalized node/cell incidence relations
CsvExporter.cpp	Implementation for CsvExporter
CsvExporter.h	Interface for Csv Exporter
CsvFormat.h	Interface of csv converter format
CsvGzExporter.cpp	Implementation for CsvGzExporter
CsvGzExporter.h	Interface for CsvGzExporter
CsvGzFormat.h	Interface of csv gzipped converter format
CumulativeRecords.h	Interface for CumulativeRecords
DHelper.h	Interface/Implementation for DeltaHamiltonian::DHelper
DiamondTile.cpp	Implementation for DiamondTile
DiamondTile.h	Interface for DiamondTile
DirectedNormal.h	MoveGenerator component: DirectedNormal
DirectedUniform.h	MoveGenerator component: DirectedUniform
directories.doxy	Documentation on directory structure
DurstenfeldShuffle.cpp	Implementation for MeshProps
DurstenfeldShuffle.h	Interface for DurstenfeldShuffle
Edge.cpp	Implementation for Edge
Edge.h	Interface for Edge
EditableCellItem.cpp	Implementation for EditableCellItem
EditableCellItem.h	Interface for EditableCellItem
EditableEdgeItem.cpp	Implementation for EditableEdgeItem
EditableEdgeItem.h	Interface for EditableEdgeItem
EditableItem.h	Interface for EditableItem
EditableMesh.cpp	Implementation for EditableMesh
EditableMesh.h	Interface for EditableMesh
EditableNodeItem.cpp	Implementation for EditableNodeItem
EditableNodeItem.h	Interface for EditableNodeItem
EditControlLogic.cpp	Implementation for LeafControlLogic
EditControlLogic.h	Interface for LeafControlLogic
EditorActions.cpp	Implementation for EditorActions
EditorActions.h	Interface for EditorActions
delta_hamiltonian/ElasticWall.cpp	Implementation for DeltaHamiltonian::ElasticWall
hamiltonian/ElasticWall.cpp	Implementation for Hamiltonian::ElasticWall
delta_hamiltonian/ElasticWall.h	Interface for DeltaHamiltonian::ElasticWall
hamiltonian/ElasticWall.h	Interface for Hamiltonian ElasticWall component
EnabledActions.cpp	EnabledActions implementation
EnabledActions.h	EnabledActions interface
Exception.h	Header file for Exception class
ExchangeCoupler.cpp	Implementation for ExchangeCoupler
ExchangeCoupler.h	Interface for ExchangeCoupler
Exploration.cpp	Implementation for Exploration
Exploration.h	Interface for Exploration
ExplorationManager.cpp	Implementation of ExplorationManager
ExplorationManager.h	Interface for ExplorationManager
ExplorationProgress.cpp	Implementation for ExplorationProgress
ExplorationProgress.h	Interface for ExplorationProgress
ExplorationSelection.cpp	Implementation for ExplorationSelection
ExplorationSelection.h	Interface for ExplorationSelection
ExplorationTask.cpp	Implementation for ExplorationTask
ExplorationTask.h	Interface for ExplorationTask
ExplorationWizard.cpp	Implementation for ExplorationWizard
ExplorationWizard.h	Interface for ExplorationWizard
ExportActions.cpp	ExportActions implementation
ExportActions.h	ExportActions header
ExporterFormat.h	Interface of File Converter Formats
Blad/components/cell2cell_transport/factories.cpp	CellToCellTransport component factory map
Blad/components/cell_chemistry/factories.cpp	Component factories map
Blad/components/cell_color/factories.cpp	CellColor component factory map
Blad/components/cell_daughters/factories.cpp	CellDaughters component factory map
Blad/components/cell_housekeep/factories.cpp	CellHousekeep component factory map
Blad/components/cell_split/factories.cpp	CellSplit component factory map
Default/components/cell2cell_transport/factories.cpp	CellToCellTransport component factory map
Default/components/cell2cell_transport_boundary/factories.cpp	CellToCellTransportBoundary component factory map
Default/components/cell_chemistry/factories.cpp	CellChemistry component factory map
Default/components/cell_color/factories.cpp	CellChemistry component factory map
Default/components/cell_daughters/factories.cpp	CellDaughters component factory map
Default/components/cell_housekeep/factories.cpp	CellHousekeep component factory map
Default/components/cell_split/factories.cpp	CellSplit component factory map
Default/components/delta_hamiltonian/factories.cpp	CellChemistry component factory map
Default/components/hamiltonian/factories.cpp	Hamiltonian component factory map
Default/components/move_generator/factories.cpp	CellSplit component factory map
Default/components/time_evolver/factories.cpp	TimeEvolver component factory map
Default/components/wall_chemistry/factories.cpp	WallChemistry component factory map
Blad/components/cell2cell_transport/factories.h	CellToCellTransport component factory map
Blad/components/cell_chemistry/factories.h	CellChemistry component factory map
Blad/components/cell_color/factories.h	CellChemistry component factory map
Blad/components/cell_daughters/factories.h	CellDaughters component factory map
Blad/components/cell_housekeep/factories.h	CellHousekeep component factory map
Blad/components/cell_split/factories.h	CellSplit component factory map
Default/components/cell2cell_transport/factories.h	CellToCellTransport component factory map
Default/components/cell2cell_transport_boundary/factories.h	CellToCellTransport component factory map
Default/components/cell_chemistry/factories.h	CellChemistry component factory map
Default/components/cell_color/factories.h	CellChemistry component factory map
Default/components/cell_daughters/factories.h	CellDaughters component factory map
Default/components/cell_housekeep/factories.h	CellHousekeep component factory map
Default/components/cell_split/factories.h	CellSplit component factory map
Default/components/delta_hamiltonian/factories.h	CellChemistry component factory map
Default/components/hamiltonian/factories.h	Hamiltonian component factory map
Default/components/move_generator/factories.h	CellSplit component factory map
Default/components/time_evolver/factories.h	TimeEvolver component factory map
Default/components/wall_chemistry/factories.h	WallChemistry component factory map
FileConversion.cpp	Implementation of file conversion manager
FileConversion.h	Interface for Conversion
FileConverterFormats.cpp	Implementation of File Converter Formats
FileConverterFormats.h	Interface of file converter formats
FileExploration.cpp	Implementation for FileExploration
FileExploration.h	Interface for FileExploration
FilesPage.cpp	Implementation for FilesPage
FilesPage.h	Interface for FilesPage
FileSystemWatcher.h	Definition for FileSystemWatcher
FileViewer.h	Interface for FileViewer
FileViewerPreferences.h	Specialization of ViewerPreferences for FileViewer
FunctionMap.h	Interface/Implementation FunctionMap
GeoData.h	Interface/Implementation for GeoData
Geom.cpp	Implementation of Geom
Geom.h	Interface for Geom
cell_housekeep/Geometric.cpp	CellHousekeep for Geometric model
cell_split/Geometric.cpp	CellSplit for Geometric model
cell_housekeep/Geometric.h	CellHousekeep for Geometric model
cell_split/Geometric.h	CellSplit for Geometric model
GNUC_VERSION.h	Macros to determine GCC major, minor and patch version
GraphicsPreferences.h	Interface/Implementation for GraphicsPreferences
Grow.cpp	Time evolver for Grow only
Grow.h	Time evolver for Grow only
GuiWorkspace.cpp	Implementation for Gui Workspace
GuiWorkspace.h	Interface for workspace
HasUnsavedChanges.cpp	Implementation for HasUnsavedChanges
HasUnsavedChanges.h	Interface for HasUnsavedChanges
HasUnsavedChangesPrompt.cpp	HasUnsavedChangesPrompt implementation
HasUnsavedChangesPrompt.h	HasUnsavedChangesPrompt interface
Hdf5Exporter.cpp	Implementation for Hdf5 Exporter
Hdf5Exporter.h	Interface for Hdf5Exporter
Hdf5File.cpp	Implementation for VirtualLeaf::Hdf5File
Hdf5File.h	Interface for VirtualLeaf::Hdf5File
Hdf5Format.cpp	Implementation of File Converter Formats
Hdf5Format.h	Interface of File Converter Formats
Hdf5Viewer.cpp	Instantiation for Hdf5Viewer
Hdf5Viewer.h	Interface for Hdf5Viewer
HexagonalTile.cpp	Implementation for HexagonalTile
HexagonalTile.h	Interface for HexagonalTile
HHelper.h	Interface/Implementation for Hamiltonian::HHelper
Housekeep.cpp	Time evolver for Housekeeping only
Housekeep.h	Time evolver for Housekeeping only
HousekeepGrow.cpp	Time evolver for Housekeep plus Grow
HousekeepGrow.h	Time evolver for Housekeep plus Grow
hsv.h	Header file for HSV colors
Hsv2Rgb.cpp	HSV color def to RBG color def: r,g,b values are from 0 to 1 and h = [0,360], s = [0,1], v = [0,1] (if s == 0, then h = -1)
Hsv2Rgb.h	Rgb color def to Hsv color def: r,g,b values are from 0 to 1 and h = [0,360], s = [0,1], v = [0,1] (if s == 0, then h = -1)
IConverterFormat.h	Interface for IConverterFormat
ICoupler.h	Interface for ICoupler
IFactory.h	Interface for IFactory
IFile.h	Interface for IFile
IHasPTreeState.h	HasPtreeState interface
IndividualRecords.h	Interface for IndividualRecords
InstallDirs.cpp	Implementation for FileSys class
InstallDirs.h	Interface for FileSys
IPreferences.h	Interface for IPreferences
IProject.h	Interface for IProject
ISession.h	Interface for ISession
ISimSession.h	Interface for sessions
ISweep.h	Interface class ISweep
IUserData.h	Interface for IUserData
IViewerNode.h	Interface for IViewerNode
IWorkspace.h	Interface for IWorkspace
IWorkspaceFactory.h	Interface for IWorkspaceFactory
ListSweep.cpp	Implementation for ListSweep
ListSweep.h	Interface for ListSweep
log_debug.h	Macro defs for debug and logging
LogViewer.h	Interface for Log Viewer
LogWindow.cpp	Implementation for LogWindow
LogWindow.h	Header for LogWindow
LogWindowViewer.cpp	Implementation for LogWindowViewer
LogWindowViewer.h	Header for LogWindowViewer
mainpage.doxy	Placeholder for main page of doxygen documentation
math.h	Math constants and functions header combo
delta_hamiltonian/Maxwell.cpp	Implementation for DeltaHamiltonian::Maxwell
hamiltonian/Maxwell.cpp	Implementation for Hamiltonian Maxwell component
delta_hamiltonian/Maxwell.h	Interface for DeltaHamiltonian::Maxwell
hamiltonian/Maxwell.h	Interface for Hamiltonian Maxwell component
MBMBuilder.cpp	Implementation of MBMBBuilder
MBMBuilder.h	Interface for MBMBBuilder
cell2cell_transport/Meinhardt.cpp	CellToCellTransport for Meinhardt model
cell_chemistry/Meinhardt.cpp	CellChemistry for Meinhardt model
cell_color/Meinhardt.cpp	CellColor::Meinhardt implementation
cell_housekeep/Meinhardt.cpp	CellHousekeep for Meinhardt model
wall_chemistry/Meinhardt.cpp	WallChemistry for Meinhardt model
cell2cell_transport/Meinhardt.h	CellToCellTransport for Meinhardt model
cell_chemistry/Meinhardt.h	CellChemistry for Meinhardt model
cell_color/Meinhardt.h	CellColor::Meinhardt header file
cell_housekeep/Meinhardt.h	CellHousekeep for Meinhardt model
wall_chemistry/Meinhardt.h	WallChemistry for Meinhardt model
MergedPreferences.cpp	Implementation for MergedPreferences
MergedPreferences.h	Interface for MergedPreferences
Mesh.cpp	Implementation for Mesh
Mesh.h	Interface for Mesh
MeshCheck.cpp	Implementation for MeshCheck
MeshCheck.h	Interface for MeshCheck
MeshDrawer.cpp	Implementation for MeshDrawer
MeshDrawer.h	Interface for MeshDrawer
MeshGeometry.cpp	Implementation for MeshProps
MeshGeometry.h	Interface for MeshGeometry
MeshState.cpp	Implementation of MeshState
MeshState.h	Interface of MeshState
MeshTopology.cpp	Implementation for MeshProps
MeshTopology.h	Interface for MeshTopology
mode_manager.h	Implementation for the mode manager
delta_hamiltonian/ModifiedGC.cpp	Implementation for DeltaHamiltonian::ModifiedGC
hamiltonian/ModifiedGC.cpp	Implementation for Hamiltonian ModifiedGC component
delta_hamiltonian/ModifiedGC.h	Interface for DeltaHamiltonian::ModifiedGC
hamiltonian/ModifiedGC.h	Interface for Hamiltonian::ModifiedGC
MyDockWidget.cpp	MyDockWidget implementation
MyDockWidget.h	Header for MyDockWidget
MyFindDialog.cpp	Implementation for MyFindDialog
MyFindDialog.h	Interface for MyFindDialog
MyGraphicsView.cpp	Implementation for MyGraphicsView
MyGraphicsView.h	Interface for MyGraphicsView
MyTreeView.cpp	Implementation for MyTreeView
MyTreeView.h	Interface for MyTreeView
namespaces.doxy	Documentation on namespaces
NeighborNodes.cpp	Implementation for NeighborNodes
NeighborNodes.h	Interface for NeighborNodes
NewProjectDialog.cpp	Implementation for NewProjectDialog
NewProjectDialog.h	Interface for NewProjectDialog
Node.cpp	Implementation for Node
Node.h	Interface for Node
NodeAdvertiser.cpp	Implementation for NodeAdvertiser
NodeAdvertiser.h	Interface for the NodeAdvertiser
NodeAttributes.cpp	Implementation for NodeAttributes
NodeAttributes.h	Interface for NodeAttributes
NodeInserter.cpp	Implementation for NodeInserter
NodeInserter.h	Interface for NodeInserter
NodeItem.cpp	Implementation for NodeItem
NodeItem.h	Interface for NodeItem
NodeMover.cpp	Implementation for NodeMover (Metropolis algorithm)
NodeMover.h	Interface for NodeMover
NodeProtocol.cpp	Implementation for NodeProtocol
NodeProtocol.h	Interface for NodeProtocol
NoOp.cpp	CellSplit NoOp implementation
cell2cell_transport/NoOp.h	CellToCellTransport NoOp
cell_chemistry/NoOp.h
cell_daughters/NoOp.h	Interface/Implementation for CellDaughters::NoOp
cell_housekeep/NoOp.h	CellHousekeep::NoOp Interface/Implementation
cell_split/NoOp.h	CellSplit NoOp implementation
wall_chemistry/NoOp.h	WallChemistry NoOp component
odeint.h	Odeint header combo
OdeintFactories0Map.cpp	Implementation for OdeintFactories0Map
OdeintFactories0Map.h	Interface for OdeintFactories0Map
OdeintFactories2Map.cpp	Implementation of OdeintFactories2Map
OdeintFactories2Map.h	Interface for OdeintFactories2Map
OdeintFactory0.h	Interface for OdeintFactory0
OdeintFactory2.h	Interface for OdeintFactory2
OdeintTraits.h	Odeint traits header file
PanAndZoomView.cpp	Implementation for PanAndZoomView
PanAndZoomView.h	Interface for PanAndZoomView
ParameterExploration.cpp	Implementation for ParameterExploration
ParameterExploration.h	Interface for ParameterExploration
ParamPage.cpp	Implementation for ParamPage
ParamPage.h	Interface for ParamPage
parex_client.cpp	Implementation of main for parameter exploration client
parex_client_mode.h	Interface/Implementation for the exec modes
parex_node.cpp	Implementation of main for parameter exploration node
parex_node_mode.h	Interface/Implementation for the exec modes
parex_server.cpp	Implementation of main for parameter exploration server
parex_server_mode.h	Interface/Implementation for the exec modes
PathPage.cpp	Implementation for PathPage
PathPage.h	Interface for PathPage
PBMBuilder.cpp	Implementation of PBMBuilder
PBMBuilder.h	Interface for PBMBBuilder
Perimeter.cpp	CellDaughters::Perimeter implementation file
Perimeter.h	CellDaughters::Perimeter header file
PIN.cpp	CellDaughters::PIN implementation file
PIN.h	Interface for CellDaughters::PIN
PINFlux.cpp	CellChemistry::PINFlux implementation file
PINFlux.h	CellChemistry::PINFlux header file
PINFlux2.cpp	CellChemistry::PINFlux2 implementation file
PINFlux2.h	CellChemistry::PINFlux2 header file
Plain.cpp	CellToCellTransport for Plain model
Plain.h	CellToCellTransport Plain model
delta_hamiltonian/PlainGC.cpp	Implementation for DeltaHamiltonian::PlainGC
hamiltonian/PlainGC.cpp	Implementation for Hamiltonian PlainGC component
delta_hamiltonian/PlainGC.h	Interface for DeltaHamiltonian::PlainGC
hamiltonian/PlainGC.h	Interface for Hamiltonian PlainGC component
PlyExporter.cpp	Implementation for PlyExporter
PlyExporter.h	Interface for PlyExporter
PlyFormat.h	Interface of PLY converter format
PolygonUtils.cpp	Implementation for PolygonUtils
PolygonUtils.h	Interface for PolygonUtils
Preferences.cpp	Implementation for Preferences
Preferences.h	Interface for Preferences
PreferencesChanged.h	Definition for PreferencesChanged
PreferencesObserver.h	Preferences observer
printArgv.h	Print (argc, argv) info
Project.cpp	Implementation for SimPT projects
cpp_simptshell/workspace/Project.h	Interface for SimPT projects
cpp_simshell/workspace/Project.h	Interface for Project
Project_def.h	Implementation for Project
ProjectChanged.h	Definition for ProjectChanged
ProjectController.cpp	ProjectController implementation
ProjectController.h	ProjectController header
Protocol.cpp	Implementation for Protocol
Protocol.h	Interface for Protocol
ptree2hdf5.cpp	Implementation of ptree2hdf5
ptree2hdf5.h	Header for ptree2hdf5
PTreeComparison.cpp	Implementation for PTreeComparison
PTreeComparison.h	Interface for PTreeComparison
PTreeContainer.cpp	Implementation for PTreeContainer
PTreeContainer.h	Interface for PTreeContainer
PTreeContainerPreferencesObserver.cpp	Implementation for PTreeContainerPreferencesObserver
PTreeContainerPreferencesObserver.h	Interface for PTreeContainerPreferencesObserver
PTreeEditor.cpp	Implementation for PTreeEditor
PTreeEditor.h	Interface for PTreeEditor
PTreeEditorWindow.cpp	Implementation of PTreeEditorWindow
PTreeEditorWindow.h	Interface for PTreeEditorWindow
PTreeFile.cpp	Implementation for PTreeFile
PTreeFile.h	Interface for PTreeFile
PTreeMenu.cpp	Implementation for PTreeMenu
PTreeMenu.h	Interface for PTreeMenu
PTreeModel.cpp	Implementation for PTreeModel
PTreeModel.h	Interface for PTreeModel
PTreePanels.cpp	Implementation for PTreePanels
PTreePanels.h	Interface for PTreePanels
PTreeQtState.cpp	Implementation for PTreeQtState
PTreeQtState.h	Interface for PTreeQtState
PtreeTissueBuilder.cpp	Implementation of PtreeTissueBuilder
PtreeTissueBuilder.h	Interface for PBMBBuilder
PTreeUndoCommands.cpp	Implementation for PTree undo commands
PTreeUndoCommands.h	Interface for PTree undo commands
PTreeUtils.cpp	PTreeUtils implementation
PTreeUtils.h	PTreeUtils interface
PTreeView.cpp	Implementation for PTreeView
PTreeView.h	Interface for PTreeView
QHostAnyAddress.h	Hack for QT 4 -> Qt 5 transition
QtClasses.doxy	Documentation on Qt classes
QtPreferences.h	Interface/Implementation for QtPreferences
QtViewer.cpp	Implementation for QtViewer
QtViewer.h	Interface for QtViewer
RandomEngine.cpp	Implementation of RandomEngine
RandomEngine.h	Interface of RandomEngine
RandomEngineType.cpp	Implementation of RandomEngineType
RandomEngineType.h	Interface of RandomEngineType
RangeSweep.cpp	Implementation for RangeSweep
RangeSweep.h	Interface for RangeSweep
RectangularTile.cpp	Implementation for RectangularTile
RectangularTile.h	Interface for RectangularTile
ReduceCellWalls.h	Interface/Implementation for ReduceCellWalls
RegularGeneratorDialog.cpp	Implementation for RegularGeneratorDialog
RegularGeneratorDialog.h	Interface for RegularGeneratorDialog
RegularTiling.cpp	Implementation for RegularTiling
RegularTiling.h	Interface for RegularTiling
RevisionInfo.h	Info on git revision and commit date
Rgb2Hsv.cpp	Rgb color def to Hsv color def: r,g,b values are from 0 to 1 and h = [0,360], s = [0,1], v = [0,1] (if s == 0, then h = -1)
Rgb2Hsv.h	Rgb color def to Hsv color def: r,g,b values are from 0 to 1 and h = [0,360], s = [0,1], v = [0,1] (if s == 0, then h = -1)
RootViewerNode.cpp	Implementation for RootViewerNode
RootViewerNode.h	Interface for RootViewerNode
SaveChangesDialog.cpp	Implementation for SaveChangesDialog
SaveChangesDialog.h	Interface for SaveChangesDialog
SegmentedVector.h	Interface and implementation for SegmentedVector class
SelectByIDWidget.cpp	Implementation for SelectByIDWidget
SelectByIDWidget.h	Interface for SelectByIDWidget
SendPage.cpp	Implementation for SendPage
SendPage.h	Interface for SendPage
Server.cpp	Implementation for Server
Server.h	Interface for Server
ServerClientProtocol.cpp	Implementation for ServerClientProtocol
ServerClientProtocol.h	Interface for ServerClientProtocol
ServerDialog.cpp	Implementation of Server Dialog
ServerDialog.h	Interface for ServerDialog
ServerInfo.cpp	Implementation for ServerInfo
ServerInfo.h	Interface for ServerInfo
ServerNodeProtocol.cpp	Implementation for ServerNodeProtocol
ServerNodeProtocol.h	Interface for ServerNodeProtocol
SessionController.cpp	SessionController implementation
SessionController.h	SessionController header
signum.h	Math signum function
Sim.cpp	Implementation for Sim
Sim.h	Sim, the actual simulator
sim_cli.cpp	Implementation for main for simulator command line interface
sim_cli_mode.h	Interface/Implementation for the exec modes
sim_gui.cpp	Implementation of main for simulator with gui
sim_gui_mode.h	Interface/Implementation for the exec modes
SimEvent.h	Definition for SimEvent
SimEventType.h	Definition for SimEventType
SimInterface.h	Simulator interface
SimPhase.h	SimPhase enum class
SimplyRed.cpp	Implementation for SimplyRed colorizer
SimplyRed.h	Header for SimplyRed colorizer
simPT_editor.cpp	Implementation for the simPT tissue editor
simPT_parex.cpp	Implementation of main for parameter exploration
simPT_sim.cpp	Implementation for main program gui and cli mode
SimResult.cpp	Implementation for SimResult
SimResult.h	Interface for SimResult
SimSession.cpp	Implementation for SimSession
SimSession.h	Interfaces for simulator session
SimSessionCoupled.cpp	Implementation for SimSessionCoupled
SimSessionCoupled.h	Interface for SimSessionCoupled
SimState.cpp	Implementation of SimState
SimState.h	Header for SimState
SimTask.cpp	Implementation for SimTask
SimTask.h	Interface for SimTask
SimTimingTraits.h	Declaration of Timekeeper
Simulator.cpp	Implementation for Simulator
Simulator.h	Interface for the Simulator
SimWorker.cpp	Implementation of SimWorker
SimWorker.h	Header for SimWorker
SimWrapper.cpp	Implementation for SimWrapper
SimWrapper.h	Interface for SimWrapper
Size.cpp	CellColor Size scheme
Size.h	CellColor Size scheme
SliceItem.cpp	Implementation for SliceItem
SliceItem.h	Interface for SliceItem
cell2cell_transport/SmithPhyllotaxis.cpp	CellToCellTransport for SmithPhyllotaxis model
cell_chemistry/SmithPhyllotaxis.cpp	CellChemistry for SmithPhyllotaxis model
cell_daughters/SmithPhyllotaxis.cpp	CellDaughters::SmithPhyllotaxis implementation
cell_housekeep/SmithPhyllotaxis.cpp	CellHousekeep for SmithPhyllotaxis model
cell2cell_transport/SmithPhyllotaxis.h	CellToCellTransport for SmithPhyllotaxis model
cell_chemistry/SmithPhyllotaxis.h	CellChemistry for SmithPhyllotaxis model
cell_daughters/SmithPhyllotaxis.h	CellDaughters::SmithPhyllotaxis header file
cell_housekeep/SmithPhyllotaxis.h	CellHousekeep for SmithPhyllotaxis model
cell2cell_transport/Source.cpp	Source CellToCellTransport component
cell_chemistry/Source.cpp	CellChemistry for Source model
cell2cell_transport/Source.h	Source CellToCellTransport component
cell_chemistry/Source.h	CellChemistry for Source model
StandardNormal.h	MoveGenerator component: StandardNormal
StandardUniform.h	MoveGenerator component: StandardUniform
StartPage.cpp	Implementation for StartPage
StartPage.h	Interface for StartPage
StartupFileBase.cpp	Implementation for StartupFileBase
StartupFileBase.h	Interface for StartupFileBase
StartupFileHdf5.cpp	Implementation for StartupFileHdf5
StartupFileHdf5.h	Interface for Hdf5 tissue file format
StartupFilePtree.cpp	Implementation for StartupFilePtree
StartupFilePtree.h	Interface for StartupFilePtree
StartupFileXml.cpp	Implementation for StartupFileXml
StartupFileXml.h	Interface for StartupFileXml
StartupFileXmlGz.cpp	Implementation for StartupFileXmlGz
StartupFileXmlGz.h	Interface for StartupFileXmlGz
Status.cpp	Implementation for Status
Status.h	Interface for Status
stdClasses.doxy	Documentation on std classes
StepFilterProxyModel.cpp	Implementation for StepFilterProxyModel
StepFilterProxyModel.h	Interface for StepFilterProxyModel
StepSelection.cpp	Implementation for StepSelection
StepSelection.h	Interface for StepSelection
Stopwatch.h	Definition of Stopwatch
StringUtils.h	String manipulation utilities
Subject.h	Interface/Implementation of Subject
SubjectNode.h	Interface for SubjectNode
SVIterator.h	Interface/Implementation for SVIterator
TaskOverview.cpp	Implementation for Task Overview
TaskOverview.h	Interface for TaskOverview
TemplateFilePage.cpp	Implementation for TemplateFilePage
TemplateFilePage.h	Interface for TemplateFilePage
cell2cell_transport/TestCoupling.cpp	CellToCellTransport component for the TestCoupling model
cell_chemistry/TestCoupling.cpp	CellChemistry component for the TestCoupling model
cell2cell_transport/TestCoupling.h	CellToCellTransport component for the TestCoupling model
cell_chemistry/TestCoupling.h	CellChemistry component for the TestCoupling model
TestCoupling_I.cpp	CellToCellTransportBoundary component for the TestCoupling model
TestCoupling_I.h	CellToCellTransportBoundary component for the TestCoupling model
TestCoupling_II.cpp	CellToCellTransportBoundary component for the TestCoupling model
TestCoupling_II.h	CellToCellTransportBoundary component for the TestCoupling model
TextViewer.h	Interface for TextViewer
TextViewerPreferences.h	Interface/Implementation for TextViewerPreferences
Tile.h	Interface for Tile
Timeable.h	Interface for Timeable
TimeData.h	Time data used during model execution
TimeSlicer.cpp	Time slice propagator
TimeSlicer.h	Time slice propagation
TimeStamp.h	TimeStamp class
TimeStepPostfixFormat.h	Interface of TimeStepPostfixFormat
TipGrowth.cpp	Implementation for SimplyRed colorizer
TipGrowth.h	Header for TipGrowth colorizer
Tissue.h	Tissue components used during model execution
TissueEditor.cpp	Implementation for LeafEditor
TissueEditor.h	Interface for the TissueEditor
TissueGraphicsView.cpp	Implementation for GraphicsView of tissue
TissueGraphicsView.h	Interface for GraphicsView of tissue
TissueSlicer.cpp	Implementation for TissueSlicer
TissueSlicer.h	Interface for TissueSlicer
TransformationWidget.cpp	Implementation for TransformationWidget
TransformationWidget.h	Interface for TransformationWidget
Transport.cpp	Time evolver for diffusion and active transport
Transport.h	Time evolver for diffusion and active transport
TransportEquations.cpp	Equations for diffusion and transport
TransportEquations.h	Equations for diffusion and transport
TriangularTile.cpp	Implementation for TriangularTile
TriangularTile.h	Interface for TriangularTile
UndoStack.cpp	Implementation for UndoLeafStack
UndoStack.h	Interface for UndoStack
Utils.h	Interface for TimeKeeper::Utils
VectorFormat.cpp	Implementation of cvector graphics converter format
VectorFormat.h	Interface of vector graphics onverter format
VectorGraphicsExporter.cpp	Implementation for VectorGraphicsExporter
VectorGraphicsExporter.h	Interface for VectorGraphicsExporter
VectorGraphicsPreferences.h	Interface/Implementation for VectorGraphicsPreferences
ViewerActions.cpp	ViewerActions implementation
ViewerActions.h	ViewerActions header
ViewerDockWidget.cpp	Implementation of ViewerDockWidget
ViewerDockWidget.h	Interface for ViewerDockWidget
ViewerEvent.h	Interface for ViewerEvent
ViewerNode.h	Interface for ViewerNode
ViewerWindow.cpp	Implementation of ViewerWindow
ViewerWindow.h	Interface for ViewerWindow
VLeaf.cpp	Implementation for time evolver of Merks et al
VLeaf.h	Interface for time evolver of Merks et al
VoronoiGeneratorDialog.cpp	Implementation for VoronoiGeneratorDialog
VoronoiGeneratorDialog.h	Interface for VoronoiGeneratorDialog
VoronoiTesselation.cpp	Implementation for VoronoiTesselation
VoronoiTesselation.h	Interface for VoronoiTesselation
VPTissue.cpp	Implementation for SimPT time evolver
VPTissue.h	Interface for SimPT time evolver
Wall.cpp	Implementation for Wall
Wall.h	Interface for Wall
WallAttributes.cpp	Implementation for WallAttributes
WallAttributes.h	Interface for WallAttributes
WallItem.cpp	Implementation for WallItem
WallItem.h	Interface for WallItem
WallType.cpp	Implementation of WallType
WallType.h	Definition of WallType
WorkerNode.cpp	Implementation for WorkerNode
WorkerNode.h	Interface for WorkerNode
WorkerPool.cpp	Implementation of WorkerPool
WorkerPool.h	Interface for WorkerPool
WorkerRepresentative.cpp	Implementation for WorkerRepresentative
WorkerRepresentative.h	Interface for WorkerRepresentative
Workspace.cpp	Implementation for Workspace
cpp_simptshell/workspace/Workspace.h	Interface for workspace
cpp_simshell/workspace/Workspace.h	Interface for Workspace
Workspace_def.h	Implementation for Workspace
WorkspaceChanged.h	Definition for WorkspaceChanged
WorkspaceController.cpp	WorkspaceController implementation
WorkspaceController.h	WorkspaceController header
WorkspaceFactory.cpp	Implementation for WorkspaceFactory
WorkspaceFactory.h	Interface for WorkspaceFactory
WorkspaceQtModel.cpp	Implementation for WorkspaceQtModel
WorkspaceQtModel.h	Interface for WorkspaceQtModel
WorkspaceView.cpp	Implementation for WorkspaceView
WorkspaceView.h	Interface for WorkspaceView
WorkspaceWizard.cpp	Implementation for WorkspaceWizard
WorkspaceWizard.h	Interface for WorkspaceWizard
cell2cell_transport/Wortel.cpp	CellToCellTransport for Wortel model
cell_chemistry/Wortel.cpp	CellChemistry for Wortel model
cell_color/Wortel.cpp	Implementation for CellColor::WortelColor
cell_daughters/Wortel.cpp	CellDaughters for Wortel model
cell_housekeep/Wortel.cpp	CellHousekeep for Wortel model
cell_split/Wortel.cpp	Implementation of CellSplit for Wortelmodel
cell2cell_transport/Wortel.h	CellToCellTransport for Wortel model
cell_chemistry/Wortel.h	CellChemistry for Wortel model
cell_color/Wortel.h	Interface for CellColor::WortelColor
cell_daughters/Wortel.h	CellDaughters for Wortel model
cell_housekeep/Wortel.h	CellHousekeep for Wortel model
cell_split/Wortel.h	CellSplit for Wortel model
cell2cell_transport/WrapperModel.cpp	CellToCellTransport for Wrapper model
cell_chemistry/WrapperModel.cpp	CellChemistry for the Wrapper model
cell_daughters/WrapperModel.cpp	CellDaughter component for Wrapper model
cell_housekeep/WrapperModel.cpp	CellHousekeep for Wrapper model
cell_split/WrapperModel.cpp	CellSplit for Wrapper model
cell2cell_transport/WrapperModel.h	CellToCellTransport for Wrapper model
cell_chemistry/WrapperModel.h	CellChemistry for the Wrapper model
cell_daughters/WrapperModel.h	CellDaughter component for Wrapper model
cell_housekeep/WrapperModel.h	CellHousekeep for Wrapper model
cell_split/WrapperModel.h	CellSplit for Wrapper model
XmlExporter.cpp	Implementation for XmlExporter
XmlExporter.h	Interface for XmlExporter
XmlFormat.h	Interface of Xml converter format
XmlGzExporter.cpp	Implementation for XmlGzExporter
XmlGzExporter.h	Interface for XmlGzExporter
XmlGzFormat.h	Interface of Xml gzipped converter format
XmlViewer.cpp	Implementation for XmlViewer
XmlViewer.h	Interface for XmlViewer
XmlWriterSettings.h	Xml writer settings class