VPTissue Reference Manual
File List
Here is a list of all documented files with brief descriptions:
 AppController.cppAppController implementation
 AppController.hAppController header
 AppCustomizer.cppImplementation of AppCustomizer
 AppCustomizer.hInterface for AppCustomizer
 AreaMoment.hInterface/Implementation for AreaMoment
 AreaThresholdBased.cppCellSplit for AreaThresholdBased model
 AreaThresholdBased.hCellSplit for AreaThresholdBased model
 array3.hExtending std with arithmetic for std::array<double, 3>
 ArrowItem.cppImplementation for ArrowItem
 ArrowItem.hInterface for ArrowItem
 AttributeContainer.cppDefinition of AttributeContainer
 AttributeContainer.hInterface of AttributeContainer
 AttributeStore.cppImplementation for AttributeStore
 AttributeStore.hInterface of AttributeStore
 cell_daughters/Auxin.cppCellDaughters component for Auxin model
 cell_housekeep/Auxin.cppCellHousekeep::Auxin implementation file
 cell_daughters/Auxin.hInterface for CellDaughters::Auxin
 cell_housekeep/Auxin.hCellHousekeep::Auxin header file
 cell2cell_transport/AuxinGrowth.cppCellToCellTransport for AuxinGrowth model
 cell_chemistry/AuxinGrowth.cppCellChemistry for AuxinGrowth model
 cell_housekeep/AuxinGrowth.cppCellHousekeep::AuxinGrowth implementation file
 cell_split/AuxinGrowth.cppCellSplit for AuxinGrowth model
 wall_chemistry/AuxinGrowth.cppWallChemistry for AuxinGrowth model
 cell2cell_transport/AuxinGrowth.hCellToCellTransport for AuxinGrowth model
 cell_chemistry/AuxinGrowth.hCellChemistry for AuxinGrowth model
 cell_housekeep/AuxinGrowth.hCellHousekeep::AuxinGrowth header file
 cell_split/AuxinGrowth.hCellSplit for AuxinGrowth model
 wall_chemistry/AuxinGrowth.hWallChemistry for AuxinGrowth model
 AuxinPIN1.cppImplementation for AuxinPIN1 colorizer
 AuxinPIN1.hHeader for AuxinPIN1 colorizer
 BackgroundDialog.cppImplementation for BackgroundDialog
 BackgroundDialog.hInterface for BackgroundDialog
 cell2cell_transport/Basic.cppBasic CellToCellTransport component
 wall_chemistry/Basic.cppBasic WallChemistry component
 cell2cell_transport/Basic.hBasic CellToCellTransport component
 wall_chemistry/Basic.hBasic WallChemistry component
 BasicAuxin.cppCellHousekeep for BasicAuxin model
 BasicAuxin.hCellHousekeep::BasicAuxin header file
 BasicPIN.cppCellDaughters::BasicPIN implementation file
 BasicPIN.hInterface for CellDaughters::BasicPIN
 BitmapFormat.cppImplementation of bitmap graphics converter format
 BitmapFormat.hInterface of bitmap graphics converter format
 BitmapGraphicsExporter.cppImplementation for BitmapGraphicsExporter
 BitmapGraphicsExporter.hInterface for BitmapGraphicsExporter
 BitmapGraphicsPreferences.hInterface/Implementation for BitmapGraphicsPreferences
 cell2cell_transport/Blad.cppCellToCellTransport for Blad model
 cell_chemistry/Blad.cppCellChemistry for Blad model
 cell_color/Blad.cppCellColor for Blad model
 cell_daughters/Blad.cppCellDaughters for Blad model
 cell_housekeep/Blad.cppCellHousekeep for Blad model
 cell_split/Blad.cppCellSplit for Blad model
 cell2cell_transport/Blad.hCellToCellTransport for Blad model
 cell_chemistry/Blad.hCellChemistry for Blad model
 cell_color/Blad.hCellColor for Blad model
 cell_daughters/Blad.hCellDaughters component of Blad model
 cell_housekeep/Blad.hCellHousekeep for Blad model
 cell_split/Blad.hCellSplit for Blad model
 BoundaryType.hBoundaryType enumeration class
 CBMBuilder.cppImplementation of CBMBBuilder
 CBMBuilder.hInterface of CBMBuilder
 Cell.cppImplementation for Cell
 Cell.hInterface for Cell
 CellAttributes.cppImplementation for CellAttributes
 CellAttributes.hInterface for CellAttributes
 CellDivider.cppImplementation of CellDivider
 CellDivider.hInterface for CellDivider
 CellHousekeeper.cppImplementation for CellHousekeeper
 CellHousekeeper.hInterface for CellHousekeeper
 CellType.hDeclaration of CellType
 ChainHull.cppImplementation of ChainHull
 ChainHull.hInterface for ChainHull
 CheckableTreeModel.cppCheckableTreeModel implementation
 CheckableTreeModel.hCheckableTreeModel header
 ChemBlue.cppChemBlue colorizer
 ChemBlue.hChemBlue colorizer
 ChemGreen.cppImplementation for CellColor::ChemGreen
 ChemGreen.hCellColor ChemGreen scheme (use black background)
 circular_iterator.hCombo header for circular iterator
 CircularIterator.hCircularIterator class and helper functions
 CircularIteratorImpl.hCircular iterator implementation
 CliController.cppImplementation for CliController
 CliController.hInterface for CliController
 CliConverterTask.hInterface/Implementation for CliConverterTask
 Client.cppImplementation for Client
 Client.hInterface for Client
 ClientHandler.cppImplementation of ClientHandler
 ClientHandler.hInterface for ClientHandler
 ClientProtocol.cppImplementation of ClientProtocol
 ClientProtocol.hInterface for ClientProtocol
 CliSimulationTask.hInterface/Implementation for CliTask
 CliWorkspace.cppImplementation for Cli Workspace
 CliWorkspace.hInterface for workspace
 CliWorkspaceManager.cppImplementation for CliWorkspacemanager
 CliWorkspaceManager.hInterface for CliWorkspaceManager
 clock_man.hUtility header file for clock related classes
 ClockCLib.hInterface/Implementation for ClockCLib
 ClockTraits.hInterface for ClockTraits
 Blad/components/ComponentFactory.cppComponent factory for the Blad model group
 Default/components/ComponentFactory.cppComponent factory for SimPT_Default model group
 Blad/components/ComponentFactory.hComponent factory for the Blad model group
 Default/components/ComponentFactory.hComponent factory for SimPT_Default model group
 ComponentFactoryBase.hInterface of Component Factory
 ComponentFactoryProxy.cppProxy for dealing with the factories
 ComponentFactoryProxy.hProxy for dealing with the factories
 ComponentInterfaces.hInterface of Model Components
 ComponentTraits.hModel component
 Compressor.cppImplementation for Compressor
 Compressor.hInterface for Compressor
 Connection.cppImplementation for Connection
 Connection.hInterface for Connection
 constants.hMath constants
 ConstCircularIterator.hConstCircularIterator class and helper functions
 ConversionList.cppImplementation for ConversionList
 ConversionList.hInterface for ConversionList
 ConverterWindow.cppImplementation for ConverterWindow
 ConverterWindow.hInterface for ConverterWindow
 CopyAttributesDialog.cppImplementation for CopyAttributesDialog
 CopyAttributesDialog.hInterface for CopyAttributesDialog
 CoreData.hCore data used during model execution
 CoupledCliController.cppImplementation for CoupledCliController
 CoupledCliController.hInterface for CoupledCliController
 CoupledSim.cppImplementation for CoupledSim
 CoupledSim.hInterface for CoupledSim
 CoupledSimEvent.hDefinition for CoupledSimEvent
 CouplerFactories.cppImplementation for CouplerFactories
 CouplerFactories.hInterface for CouplerFactories
 CSRMatrix.hData strucuture for generalized node/cell incidence relations
 CsvExporter.cppImplementation for CsvExporter
 CsvExporter.hInterface for Csv Exporter
 CsvFormat.hInterface of csv converter format
 CsvGzExporter.cppImplementation for CsvGzExporter
 CsvGzExporter.hInterface for CsvGzExporter
 CsvGzFormat.hInterface of csv gzipped converter format
 CumulativeRecords.hInterface for CumulativeRecords
 DHelper.hInterface/Implementation for DeltaHamiltonian::DHelper
 DiamondTile.cppImplementation for DiamondTile
 DiamondTile.hInterface for DiamondTile
 DirectedNormal.hMoveGenerator component: DirectedNormal
 DirectedUniform.hMoveGenerator component: DirectedUniform
 directories.doxyDocumentation on directory structure
 DurstenfeldShuffle.cppImplementation for MeshProps
 DurstenfeldShuffle.hInterface for DurstenfeldShuffle
 Edge.cppImplementation for Edge
 Edge.hInterface for Edge
 EditableCellItem.cppImplementation for EditableCellItem
 EditableCellItem.hInterface for EditableCellItem
 EditableEdgeItem.cppImplementation for EditableEdgeItem
 EditableEdgeItem.hInterface for EditableEdgeItem
 EditableItem.hInterface for EditableItem
 EditableMesh.cppImplementation for EditableMesh
 EditableMesh.hInterface for EditableMesh
 EditableNodeItem.cppImplementation for EditableNodeItem
 EditableNodeItem.hInterface for EditableNodeItem
 EditControlLogic.cppImplementation for LeafControlLogic
 EditControlLogic.hInterface for LeafControlLogic
 EditorActions.cppImplementation for EditorActions
 EditorActions.hInterface for EditorActions
 delta_hamiltonian/ElasticWall.cppImplementation for DeltaHamiltonian::ElasticWall
 hamiltonian/ElasticWall.cppImplementation for Hamiltonian::ElasticWall
 delta_hamiltonian/ElasticWall.hInterface for DeltaHamiltonian::ElasticWall
 hamiltonian/ElasticWall.hInterface for Hamiltonian ElasticWall component
 EnabledActions.cppEnabledActions implementation
 EnabledActions.hEnabledActions interface
 Exception.hHeader file for Exception class
 ExchangeCoupler.cppImplementation for ExchangeCoupler
 ExchangeCoupler.hInterface for ExchangeCoupler
 Exploration.cppImplementation for Exploration
 Exploration.hInterface for Exploration
 ExplorationManager.cppImplementation of ExplorationManager
 ExplorationManager.hInterface for ExplorationManager
 ExplorationProgress.cppImplementation for ExplorationProgress
 ExplorationProgress.hInterface for ExplorationProgress
 ExplorationSelection.cppImplementation for ExplorationSelection
 ExplorationSelection.hInterface for ExplorationSelection
 ExplorationTask.cppImplementation for ExplorationTask
 ExplorationTask.hInterface for ExplorationTask
 ExplorationWizard.cppImplementation for ExplorationWizard
 ExplorationWizard.hInterface for ExplorationWizard
 ExportActions.cppExportActions implementation
 ExportActions.hExportActions header
 ExporterFormat.hInterface of File Converter Formats
 Blad/components/cell2cell_transport/factories.cppCellToCellTransport component factory map
 Blad/components/cell_chemistry/factories.cppComponent factories map
 Blad/components/cell_color/factories.cppCellColor component factory map
 Blad/components/cell_daughters/factories.cppCellDaughters component factory map
 Blad/components/cell_housekeep/factories.cppCellHousekeep component factory map
 Blad/components/cell_split/factories.cppCellSplit component factory map
 Default/components/cell2cell_transport/factories.cppCellToCellTransport component factory map
 Default/components/cell2cell_transport_boundary/factories.cppCellToCellTransportBoundary component factory map
 Default/components/cell_chemistry/factories.cppCellChemistry component factory map
 Default/components/cell_color/factories.cppCellChemistry component factory map
 Default/components/cell_daughters/factories.cppCellDaughters component factory map
 Default/components/cell_housekeep/factories.cppCellHousekeep component factory map
 Default/components/cell_split/factories.cppCellSplit component factory map
 Default/components/delta_hamiltonian/factories.cppCellChemistry component factory map
 Default/components/hamiltonian/factories.cppHamiltonian component factory map
 Default/components/move_generator/factories.cppCellSplit component factory map
 Default/components/time_evolver/factories.cppTimeEvolver component factory map
 Default/components/wall_chemistry/factories.cppWallChemistry component factory map
 Blad/components/cell2cell_transport/factories.hCellToCellTransport component factory map
 Blad/components/cell_chemistry/factories.hCellChemistry component factory map
 Blad/components/cell_color/factories.hCellChemistry component factory map
 Blad/components/cell_daughters/factories.hCellDaughters component factory map
 Blad/components/cell_housekeep/factories.hCellHousekeep component factory map
 Blad/components/cell_split/factories.hCellSplit component factory map
 Default/components/cell2cell_transport/factories.hCellToCellTransport component factory map
 Default/components/cell2cell_transport_boundary/factories.hCellToCellTransport component factory map
 Default/components/cell_chemistry/factories.hCellChemistry component factory map
 Default/components/cell_color/factories.hCellChemistry component factory map
 Default/components/cell_daughters/factories.hCellDaughters component factory map
 Default/components/cell_housekeep/factories.hCellHousekeep component factory map
 Default/components/cell_split/factories.hCellSplit component factory map
 Default/components/delta_hamiltonian/factories.hCellChemistry component factory map
 Default/components/hamiltonian/factories.hHamiltonian component factory map
 Default/components/move_generator/factories.hCellSplit component factory map
 Default/components/time_evolver/factories.hTimeEvolver component factory map
 Default/components/wall_chemistry/factories.hWallChemistry component factory map
 FileConversion.cppImplementation of file conversion manager
 FileConversion.hInterface for Conversion
 FileConverterFormats.cppImplementation of File Converter Formats
 FileConverterFormats.hInterface of file converter formats
 FileExploration.cppImplementation for FileExploration
 FileExploration.hInterface for FileExploration
 FilesPage.cppImplementation for FilesPage
 FilesPage.hInterface for FilesPage
 FileSystemWatcher.hDefinition for FileSystemWatcher
 FileViewer.hInterface for FileViewer
 FileViewerPreferences.hSpecialization of ViewerPreferences for FileViewer
 FunctionMap.hInterface/Implementation FunctionMap
 GeoData.hInterface/Implementation for GeoData
 Geom.cppImplementation of Geom
 Geom.hInterface for Geom
 cell_housekeep/Geometric.cppCellHousekeep for Geometric model
 cell_split/Geometric.cppCellSplit for Geometric model
 cell_housekeep/Geometric.hCellHousekeep for Geometric model
 cell_split/Geometric.hCellSplit for Geometric model
 GNUC_VERSION.hMacros to determine GCC major, minor and patch version
 GraphicsPreferences.hInterface/Implementation for GraphicsPreferences
 Grow.cppTime evolver for Grow only
 Grow.hTime evolver for Grow only
 GuiWorkspace.cppImplementation for Gui Workspace
 GuiWorkspace.hInterface for workspace
 HasUnsavedChanges.cppImplementation for HasUnsavedChanges
 HasUnsavedChanges.hInterface for HasUnsavedChanges
 HasUnsavedChangesPrompt.cppHasUnsavedChangesPrompt implementation
 HasUnsavedChangesPrompt.hHasUnsavedChangesPrompt interface
 Hdf5Exporter.cppImplementation for Hdf5 Exporter
 Hdf5Exporter.hInterface for Hdf5Exporter
 Hdf5File.cppImplementation for VirtualLeaf::Hdf5File
 Hdf5File.hInterface for VirtualLeaf::Hdf5File
 Hdf5Format.cppImplementation of File Converter Formats
 Hdf5Format.hInterface of File Converter Formats
 Hdf5Viewer.cppInstantiation for Hdf5Viewer
 Hdf5Viewer.hInterface for Hdf5Viewer
 HexagonalTile.cppImplementation for HexagonalTile
 HexagonalTile.hInterface for HexagonalTile
 HHelper.hInterface/Implementation for Hamiltonian::HHelper
 Housekeep.cppTime evolver for Housekeeping only
 Housekeep.hTime evolver for Housekeeping only
 HousekeepGrow.cppTime evolver for Housekeep plus Grow
 HousekeepGrow.hTime evolver for Housekeep plus Grow
 hsv.hHeader file for HSV colors
 Hsv2Rgb.cppHSV color def to RBG color def: r,g,b values are from 0 to 1 and h = [0,360], s = [0,1], v = [0,1] (if s == 0, then h = -1)
 Hsv2Rgb.hRgb color def to Hsv color def: r,g,b values are from 0 to 1 and h = [0,360], s = [0,1], v = [0,1] (if s == 0, then h = -1)
 IConverterFormat.hInterface for IConverterFormat
 ICoupler.hInterface for ICoupler
 IFactory.hInterface for IFactory
 IFile.hInterface for IFile
 IHasPTreeState.hHasPtreeState interface
 IndividualRecords.hInterface for IndividualRecords
 InstallDirs.cppImplementation for FileSys class
 InstallDirs.hInterface for FileSys
 IPreferences.hInterface for IPreferences
 IProject.hInterface for IProject
 ISession.hInterface for ISession
 ISimSession.hInterface for sessions
 ISweep.hInterface class ISweep
 IUserData.hInterface for IUserData
 IViewerNode.hInterface for IViewerNode
 IWorkspace.hInterface for IWorkspace
 IWorkspaceFactory.hInterface for IWorkspaceFactory
 ListSweep.cppImplementation for ListSweep
 ListSweep.hInterface for ListSweep
 log_debug.hMacro defs for debug and logging
 LogViewer.hInterface for Log Viewer
 LogWindow.cppImplementation for LogWindow
 LogWindow.hHeader for LogWindow
 LogWindowViewer.cppImplementation for LogWindowViewer
 LogWindowViewer.hHeader for LogWindowViewer
 mainpage.doxyPlaceholder for main page of doxygen documentation
 math.hMath constants and functions header combo
 delta_hamiltonian/Maxwell.cppImplementation for DeltaHamiltonian::Maxwell
 hamiltonian/Maxwell.cppImplementation for Hamiltonian Maxwell component
 delta_hamiltonian/Maxwell.hInterface for DeltaHamiltonian::Maxwell
 hamiltonian/Maxwell.hInterface for Hamiltonian Maxwell component
 MBMBuilder.cppImplementation of MBMBBuilder
 MBMBuilder.hInterface for MBMBBuilder
 cell2cell_transport/Meinhardt.cppCellToCellTransport for Meinhardt model
 cell_chemistry/Meinhardt.cppCellChemistry for Meinhardt model
 cell_color/Meinhardt.cppCellColor::Meinhardt implementation
 cell_housekeep/Meinhardt.cppCellHousekeep for Meinhardt model
 wall_chemistry/Meinhardt.cppWallChemistry for Meinhardt model
 cell2cell_transport/Meinhardt.hCellToCellTransport for Meinhardt model
 cell_chemistry/Meinhardt.hCellChemistry for Meinhardt model
 cell_color/Meinhardt.hCellColor::Meinhardt header file
 cell_housekeep/Meinhardt.hCellHousekeep for Meinhardt model
 wall_chemistry/Meinhardt.hWallChemistry for Meinhardt model
 MergedPreferences.cppImplementation for MergedPreferences
 MergedPreferences.hInterface for MergedPreferences
 Mesh.cppImplementation for Mesh
 Mesh.hInterface for Mesh
 MeshCheck.cppImplementation for MeshCheck
 MeshCheck.hInterface for MeshCheck
 MeshDrawer.cppImplementation for MeshDrawer
 MeshDrawer.hInterface for MeshDrawer
 MeshGeometry.cppImplementation for MeshProps
 MeshGeometry.hInterface for MeshGeometry
 MeshState.cppImplementation of MeshState
 MeshState.hInterface of MeshState
 MeshTopology.cppImplementation for MeshProps
 MeshTopology.hInterface for MeshTopology
 mode_manager.hImplementation for the mode manager
 delta_hamiltonian/ModifiedGC.cppImplementation for DeltaHamiltonian::ModifiedGC
 hamiltonian/ModifiedGC.cppImplementation for Hamiltonian ModifiedGC component
 delta_hamiltonian/ModifiedGC.hInterface for DeltaHamiltonian::ModifiedGC
 hamiltonian/ModifiedGC.hInterface for Hamiltonian::ModifiedGC
 MyDockWidget.cppMyDockWidget implementation
 MyDockWidget.hHeader for MyDockWidget
 MyFindDialog.cppImplementation for MyFindDialog
 MyFindDialog.hInterface for MyFindDialog
 MyGraphicsView.cppImplementation for MyGraphicsView
 MyGraphicsView.hInterface for MyGraphicsView
 MyTreeView.cppImplementation for MyTreeView
 MyTreeView.hInterface for MyTreeView
 namespaces.doxyDocumentation on namespaces
 NeighborNodes.cppImplementation for NeighborNodes
 NeighborNodes.hInterface for NeighborNodes
 NewProjectDialog.cppImplementation for NewProjectDialog
 NewProjectDialog.hInterface for NewProjectDialog
 Node.cppImplementation for Node
 Node.hInterface for Node
 NodeAdvertiser.cppImplementation for NodeAdvertiser
 NodeAdvertiser.hInterface for the NodeAdvertiser
 NodeAttributes.cppImplementation for NodeAttributes
 NodeAttributes.hInterface for NodeAttributes
 NodeInserter.cppImplementation for NodeInserter
 NodeInserter.hInterface for NodeInserter
 NodeItem.cppImplementation for NodeItem
 NodeItem.hInterface for NodeItem
 NodeMover.cppImplementation for NodeMover (Metropolis algorithm)
 NodeMover.hInterface for NodeMover
 NodeProtocol.cppImplementation for NodeProtocol
 NodeProtocol.hInterface for NodeProtocol
 NoOp.cppCellSplit NoOp implementation
 cell2cell_transport/NoOp.hCellToCellTransport NoOp
 cell_chemistry/NoOp.h
 cell_daughters/NoOp.hInterface/Implementation for CellDaughters::NoOp
 cell_housekeep/NoOp.hCellHousekeep::NoOp Interface/Implementation
 cell_split/NoOp.hCellSplit NoOp implementation
 wall_chemistry/NoOp.hWallChemistry NoOp component
 odeint.hOdeint header combo
 OdeintFactories0Map.cppImplementation for OdeintFactories0Map
 OdeintFactories0Map.hInterface for OdeintFactories0Map
 OdeintFactories2Map.cppImplementation of OdeintFactories2Map
 OdeintFactories2Map.hInterface for OdeintFactories2Map
 OdeintFactory0.hInterface for OdeintFactory0
 OdeintFactory2.hInterface for OdeintFactory2
 OdeintTraits.hOdeint traits header file
 PanAndZoomView.cppImplementation for PanAndZoomView
 PanAndZoomView.hInterface for PanAndZoomView
 ParameterExploration.cppImplementation for ParameterExploration
 ParameterExploration.hInterface for ParameterExploration
 ParamPage.cppImplementation for ParamPage
 ParamPage.hInterface for ParamPage
 parex_client.cppImplementation of main for parameter exploration client
 parex_client_mode.hInterface/Implementation for the exec modes
 parex_node.cppImplementation of main for parameter exploration node
 parex_node_mode.hInterface/Implementation for the exec modes
 parex_server.cppImplementation of main for parameter exploration server
 parex_server_mode.hInterface/Implementation for the exec modes
 PathPage.cppImplementation for PathPage
 PathPage.hInterface for PathPage
 PBMBuilder.cppImplementation of PBMBuilder
 PBMBuilder.hInterface for PBMBBuilder
 Perimeter.cppCellDaughters::Perimeter implementation file
 Perimeter.hCellDaughters::Perimeter header file
 PIN.cppCellDaughters::PIN implementation file
 PIN.hInterface for CellDaughters::PIN
 PINFlux.cppCellChemistry::PINFlux implementation file
 PINFlux.hCellChemistry::PINFlux header file
 PINFlux2.cppCellChemistry::PINFlux2 implementation file
 PINFlux2.hCellChemistry::PINFlux2 header file
 Plain.cppCellToCellTransport for Plain model
 Plain.hCellToCellTransport Plain model
 delta_hamiltonian/PlainGC.cppImplementation for DeltaHamiltonian::PlainGC
 hamiltonian/PlainGC.cppImplementation for Hamiltonian PlainGC component
 delta_hamiltonian/PlainGC.hInterface for DeltaHamiltonian::PlainGC
 hamiltonian/PlainGC.hInterface for Hamiltonian PlainGC component
 PlyExporter.cppImplementation for PlyExporter
 PlyExporter.hInterface for PlyExporter
 PlyFormat.hInterface of PLY converter format
 PolygonUtils.cppImplementation for PolygonUtils
 PolygonUtils.hInterface for PolygonUtils
 Preferences.cppImplementation for Preferences
 Preferences.hInterface for Preferences
 PreferencesChanged.hDefinition for PreferencesChanged
 PreferencesObserver.hPreferences observer
 printArgv.hPrint (argc, argv) info
 Project.cppImplementation for SimPT projects
 cpp_simptshell/workspace/Project.hInterface for SimPT projects
 cpp_simshell/workspace/Project.hInterface for Project
 Project_def.hImplementation for Project
 ProjectChanged.hDefinition for ProjectChanged
 ProjectController.cppProjectController implementation
 ProjectController.hProjectController header
 Protocol.cppImplementation for Protocol
 Protocol.hInterface for Protocol
 ptree2hdf5.cppImplementation of ptree2hdf5
 ptree2hdf5.hHeader for ptree2hdf5
 PTreeComparison.cppImplementation for PTreeComparison
 PTreeComparison.hInterface for PTreeComparison
 PTreeContainer.cppImplementation for PTreeContainer
 PTreeContainer.hInterface for PTreeContainer
 PTreeContainerPreferencesObserver.cppImplementation for PTreeContainerPreferencesObserver
 PTreeContainerPreferencesObserver.hInterface for PTreeContainerPreferencesObserver
 PTreeEditor.cppImplementation for PTreeEditor
 PTreeEditor.hInterface for PTreeEditor
 PTreeEditorWindow.cppImplementation of PTreeEditorWindow
 PTreeEditorWindow.hInterface for PTreeEditorWindow
 PTreeFile.cppImplementation for PTreeFile
 PTreeFile.hInterface for PTreeFile
 PTreeMenu.cppImplementation for PTreeMenu
 PTreeMenu.hInterface for PTreeMenu
 PTreeModel.cppImplementation for PTreeModel
 PTreeModel.hInterface for PTreeModel
 PTreePanels.cppImplementation for PTreePanels
 PTreePanels.hInterface for PTreePanels
 PTreeQtState.cppImplementation for PTreeQtState
 PTreeQtState.hInterface for PTreeQtState
 PtreeTissueBuilder.cppImplementation of PtreeTissueBuilder
 PtreeTissueBuilder.hInterface for PBMBBuilder
 PTreeUndoCommands.cppImplementation for PTree undo commands
 PTreeUndoCommands.hInterface for PTree undo commands
 PTreeUtils.cppPTreeUtils implementation
 PTreeUtils.hPTreeUtils interface
 PTreeView.cppImplementation for PTreeView
 PTreeView.hInterface for PTreeView
 QHostAnyAddress.hHack for QT 4 -> Qt 5 transition
 QtClasses.doxyDocumentation on Qt classes
 QtPreferences.hInterface/Implementation for QtPreferences
 QtViewer.cppImplementation for QtViewer
 QtViewer.hInterface for QtViewer
 RandomEngine.cppImplementation of RandomEngine
 RandomEngine.hInterface of RandomEngine
 RandomEngineType.cppImplementation of RandomEngineType
 RandomEngineType.hInterface of RandomEngineType
 RangeSweep.cppImplementation for RangeSweep
 RangeSweep.hInterface for RangeSweep
 RectangularTile.cppImplementation for RectangularTile
 RectangularTile.hInterface for RectangularTile
 ReduceCellWalls.hInterface/Implementation for ReduceCellWalls
 RegularGeneratorDialog.cppImplementation for RegularGeneratorDialog
 RegularGeneratorDialog.hInterface for RegularGeneratorDialog
 RegularTiling.cppImplementation for RegularTiling
 RegularTiling.hInterface for RegularTiling
 RevisionInfo.hInfo on git revision and commit date
 Rgb2Hsv.cppRgb color def to Hsv color def: r,g,b values are from 0 to 1 and h = [0,360], s = [0,1], v = [0,1] (if s == 0, then h = -1)
 Rgb2Hsv.hRgb color def to Hsv color def: r,g,b values are from 0 to 1 and h = [0,360], s = [0,1], v = [0,1] (if s == 0, then h = -1)
 RootViewerNode.cppImplementation for RootViewerNode
 RootViewerNode.hInterface for RootViewerNode
 SaveChangesDialog.cppImplementation for SaveChangesDialog
 SaveChangesDialog.hInterface for SaveChangesDialog
 SegmentedVector.hInterface and implementation for SegmentedVector class
 SelectByIDWidget.cppImplementation for SelectByIDWidget
 SelectByIDWidget.hInterface for SelectByIDWidget
 SendPage.cppImplementation for SendPage
 SendPage.hInterface for SendPage
 Server.cppImplementation for Server
 Server.hInterface for Server
 ServerClientProtocol.cppImplementation for ServerClientProtocol
 ServerClientProtocol.hInterface for ServerClientProtocol
 ServerDialog.cppImplementation of Server Dialog
 ServerDialog.hInterface for ServerDialog
 ServerInfo.cppImplementation for ServerInfo
 ServerInfo.hInterface for ServerInfo
 ServerNodeProtocol.cppImplementation for ServerNodeProtocol
 ServerNodeProtocol.hInterface for ServerNodeProtocol
 SessionController.cppSessionController implementation
 SessionController.hSessionController header
 signum.hMath signum function
 Sim.cppImplementation for Sim
 Sim.hSim, the actual simulator
 sim_cli.cppImplementation for main for simulator command line interface
 sim_cli_mode.hInterface/Implementation for the exec modes
 sim_gui.cppImplementation of main for simulator with gui
 sim_gui_mode.hInterface/Implementation for the exec modes
 SimEvent.hDefinition for SimEvent
 SimEventType.hDefinition for SimEventType
 SimInterface.hSimulator interface
 SimPhase.hSimPhase enum class
 SimplyRed.cppImplementation for SimplyRed colorizer
 SimplyRed.hHeader for SimplyRed colorizer
 simPT_editor.cppImplementation for the simPT tissue editor
 simPT_parex.cppImplementation of main for parameter exploration
 simPT_sim.cppImplementation for main program gui and cli mode
 SimResult.cppImplementation for SimResult
 SimResult.hInterface for SimResult
 SimSession.cppImplementation for SimSession
 SimSession.hInterfaces for simulator session
 SimSessionCoupled.cppImplementation for SimSessionCoupled
 SimSessionCoupled.hInterface for SimSessionCoupled
 SimState.cppImplementation of SimState
 SimState.hHeader for SimState
 SimTask.cppImplementation for SimTask
 SimTask.hInterface for SimTask
 SimTimingTraits.hDeclaration of Timekeeper
 Simulator.cppImplementation for Simulator
 Simulator.hInterface for the Simulator
 SimWorker.cppImplementation of SimWorker
 SimWorker.hHeader for SimWorker
 SimWrapper.cppImplementation for SimWrapper
 SimWrapper.hInterface for SimWrapper
 Size.cppCellColor Size scheme
 Size.hCellColor Size scheme
 SliceItem.cppImplementation for SliceItem
 SliceItem.hInterface for SliceItem
 cell2cell_transport/SmithPhyllotaxis.cppCellToCellTransport for SmithPhyllotaxis model
 cell_chemistry/SmithPhyllotaxis.cppCellChemistry for SmithPhyllotaxis model
 cell_daughters/SmithPhyllotaxis.cppCellDaughters::SmithPhyllotaxis implementation
 cell_housekeep/SmithPhyllotaxis.cppCellHousekeep for SmithPhyllotaxis model
 cell2cell_transport/SmithPhyllotaxis.hCellToCellTransport for SmithPhyllotaxis model
 cell_chemistry/SmithPhyllotaxis.hCellChemistry for SmithPhyllotaxis model
 cell_daughters/SmithPhyllotaxis.hCellDaughters::SmithPhyllotaxis header file
 cell_housekeep/SmithPhyllotaxis.hCellHousekeep for SmithPhyllotaxis model
 cell2cell_transport/Source.cppSource CellToCellTransport component
 cell_chemistry/Source.cppCellChemistry for Source model
 cell2cell_transport/Source.hSource CellToCellTransport component
 cell_chemistry/Source.hCellChemistry for Source model
 StandardNormal.hMoveGenerator component: StandardNormal
 StandardUniform.hMoveGenerator component: StandardUniform
 StartPage.cppImplementation for StartPage
 StartPage.hInterface for StartPage
 StartupFileBase.cppImplementation for StartupFileBase
 StartupFileBase.hInterface for StartupFileBase
 StartupFileHdf5.cppImplementation for StartupFileHdf5
 StartupFileHdf5.hInterface for Hdf5 tissue file format
 StartupFilePtree.cppImplementation for StartupFilePtree
 StartupFilePtree.hInterface for StartupFilePtree
 StartupFileXml.cppImplementation for StartupFileXml
 StartupFileXml.hInterface for StartupFileXml
 StartupFileXmlGz.cppImplementation for StartupFileXmlGz
 StartupFileXmlGz.hInterface for StartupFileXmlGz
 Status.cppImplementation for Status
 Status.hInterface for Status
 stdClasses.doxyDocumentation on std classes
 StepFilterProxyModel.cppImplementation for StepFilterProxyModel
 StepFilterProxyModel.hInterface for StepFilterProxyModel
 StepSelection.cppImplementation for StepSelection
 StepSelection.hInterface for StepSelection
 Stopwatch.hDefinition of Stopwatch
 StringUtils.hString manipulation utilities
 Subject.hInterface/Implementation of Subject
 SubjectNode.hInterface for SubjectNode
 SVIterator.hInterface/Implementation for SVIterator
 TaskOverview.cppImplementation for Task Overview
 TaskOverview.hInterface for TaskOverview
 TemplateFilePage.cppImplementation for TemplateFilePage
 TemplateFilePage.hInterface for TemplateFilePage
 cell2cell_transport/TestCoupling.cppCellToCellTransport component for the TestCoupling model
 cell_chemistry/TestCoupling.cppCellChemistry component for the TestCoupling model
 cell2cell_transport/TestCoupling.hCellToCellTransport component for the TestCoupling model
 cell_chemistry/TestCoupling.hCellChemistry component for the TestCoupling model
 TestCoupling_I.cppCellToCellTransportBoundary component for the TestCoupling model
 TestCoupling_I.hCellToCellTransportBoundary component for the TestCoupling model
 TestCoupling_II.cppCellToCellTransportBoundary component for the TestCoupling model
 TestCoupling_II.hCellToCellTransportBoundary component for the TestCoupling model
 TextViewer.hInterface for TextViewer
 TextViewerPreferences.hInterface/Implementation for TextViewerPreferences
 Tile.hInterface for Tile
 Timeable.hInterface for Timeable
 TimeData.hTime data used during model execution
 TimeSlicer.cppTime slice propagator
 TimeSlicer.hTime slice propagation
 TimeStamp.hTimeStamp class
 TimeStepPostfixFormat.hInterface of TimeStepPostfixFormat
 TipGrowth.cppImplementation for SimplyRed colorizer
 TipGrowth.hHeader for TipGrowth colorizer
 Tissue.hTissue components used during model execution
 TissueEditor.cppImplementation for LeafEditor
 TissueEditor.hInterface for the TissueEditor
 TissueGraphicsView.cppImplementation for GraphicsView of tissue
 TissueGraphicsView.hInterface for GraphicsView of tissue
 TissueSlicer.cppImplementation for TissueSlicer
 TissueSlicer.hInterface for TissueSlicer
 TransformationWidget.cppImplementation for TransformationWidget
 TransformationWidget.hInterface for TransformationWidget
 Transport.cppTime evolver for diffusion and active transport
 Transport.hTime evolver for diffusion and active transport
 TransportEquations.cppEquations for diffusion and transport
 TransportEquations.hEquations for diffusion and transport
 TriangularTile.cppImplementation for TriangularTile
 TriangularTile.hInterface for TriangularTile
 UndoStack.cppImplementation for UndoLeafStack
 UndoStack.hInterface for UndoStack
 Utils.hInterface for TimeKeeper::Utils
 VectorFormat.cppImplementation of cvector graphics converter format
 VectorFormat.hInterface of vector graphics onverter format
 VectorGraphicsExporter.cppImplementation for VectorGraphicsExporter
 VectorGraphicsExporter.hInterface for VectorGraphicsExporter
 VectorGraphicsPreferences.hInterface/Implementation for VectorGraphicsPreferences
 ViewerActions.cppViewerActions implementation
 ViewerActions.hViewerActions header
 ViewerDockWidget.cppImplementation of ViewerDockWidget
 ViewerDockWidget.hInterface for ViewerDockWidget
 ViewerEvent.hInterface for ViewerEvent
 ViewerNode.hInterface for ViewerNode
 ViewerWindow.cppImplementation of ViewerWindow
 ViewerWindow.hInterface for ViewerWindow
 VLeaf.cppImplementation for time evolver of Merks et al
 VLeaf.hInterface for time evolver of Merks et al
 VoronoiGeneratorDialog.cppImplementation for VoronoiGeneratorDialog
 VoronoiGeneratorDialog.hInterface for VoronoiGeneratorDialog
 VoronoiTesselation.cppImplementation for VoronoiTesselation
 VoronoiTesselation.hInterface for VoronoiTesselation
 VPTissue.cppImplementation for SimPT time evolver
 VPTissue.hInterface for SimPT time evolver
 Wall.cppImplementation for Wall
 Wall.hInterface for Wall
 WallAttributes.cppImplementation for WallAttributes
 WallAttributes.hInterface for WallAttributes
 WallItem.cppImplementation for WallItem
 WallItem.hInterface for WallItem
 WallType.cppImplementation of WallType
 WallType.hDefinition of WallType
 WorkerNode.cppImplementation for WorkerNode
 WorkerNode.hInterface for WorkerNode
 WorkerPool.cppImplementation of WorkerPool
 WorkerPool.hInterface for WorkerPool
 WorkerRepresentative.cppImplementation for WorkerRepresentative
 WorkerRepresentative.hInterface for WorkerRepresentative
 Workspace.cppImplementation for Workspace
 cpp_simptshell/workspace/Workspace.hInterface for workspace
 cpp_simshell/workspace/Workspace.hInterface for Workspace
 Workspace_def.hImplementation for Workspace
 WorkspaceChanged.hDefinition for WorkspaceChanged
 WorkspaceController.cppWorkspaceController implementation
 WorkspaceController.hWorkspaceController header
 WorkspaceFactory.cppImplementation for WorkspaceFactory
 WorkspaceFactory.hInterface for WorkspaceFactory
 WorkspaceQtModel.cppImplementation for WorkspaceQtModel
 WorkspaceQtModel.hInterface for WorkspaceQtModel
 WorkspaceView.cppImplementation for WorkspaceView
 WorkspaceView.hInterface for WorkspaceView
 WorkspaceWizard.cppImplementation for WorkspaceWizard
 WorkspaceWizard.hInterface for WorkspaceWizard
 cell2cell_transport/Wortel.cppCellToCellTransport for Wortel model
 cell_chemistry/Wortel.cppCellChemistry for Wortel model
 cell_color/Wortel.cppImplementation for CellColor::WortelColor
 cell_daughters/Wortel.cppCellDaughters for Wortel model
 cell_housekeep/Wortel.cppCellHousekeep for Wortel model
 cell_split/Wortel.cppImplementation of CellSplit for Wortelmodel
 cell2cell_transport/Wortel.hCellToCellTransport for Wortel model
 cell_chemistry/Wortel.hCellChemistry for Wortel model
 cell_color/Wortel.hInterface for CellColor::WortelColor
 cell_daughters/Wortel.hCellDaughters for Wortel model
 cell_housekeep/Wortel.hCellHousekeep for Wortel model
 cell_split/Wortel.hCellSplit for Wortel model
 cell2cell_transport/WrapperModel.cppCellToCellTransport for Wrapper model
 cell_chemistry/WrapperModel.cppCellChemistry for the Wrapper model
 cell_daughters/WrapperModel.cppCellDaughter component for Wrapper model
 cell_housekeep/WrapperModel.cppCellHousekeep for Wrapper model
 cell_split/WrapperModel.cppCellSplit for Wrapper model
 cell2cell_transport/WrapperModel.hCellToCellTransport for Wrapper model
 cell_chemistry/WrapperModel.hCellChemistry for the Wrapper model
 cell_daughters/WrapperModel.hCellDaughter component for Wrapper model
 cell_housekeep/WrapperModel.hCellHousekeep for Wrapper model
 cell_split/WrapperModel.hCellSplit for Wrapper model
 XmlExporter.cppImplementation for XmlExporter
 XmlExporter.hInterface for XmlExporter
 XmlFormat.hInterface of Xml converter format
 XmlGzExporter.cppImplementation for XmlGzExporter
 XmlGzExporter.hInterface for XmlGzExporter
 XmlGzFormat.hInterface of Xml gzipped converter format
 XmlViewer.cppImplementation for XmlViewer
 XmlViewer.hInterface for XmlViewer
 XmlWriterSettings.hXml writer settings class