cell_chemistry/SmithPhyllotaxis.h

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#ifndef DEFAULT_CELL_CHEMISTRY_SMITHPHYLLOTAXIS_H_INCLUDED
#define DEFAULT_CELL_CHEMISTRY_SMITHPHYLLOTAXIS_H_INCLUDED
/*
 * Copyright 2011-2016 Universiteit Antwerpen
 *
 * Licensed under the EUPL, Version 1.1 or  as soon they will be approved by
 * the European Commission - subsequent versions of the EUPL (the "Licence");
 * You may not use this work except in compliance with the Licence.
 * You may obtain a copy of the Licence at: http://ec.europa.eu/idabc/eupl5
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the Licence is distributed on an "AS IS" basis,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the Licence for the specific language governing
 * permissions and limitations under the Licence.
 */
#include "sim/CoreData.h"

namespace SimPT_Sim {
class Cell;
class Wall;
}

namespace SimPT_Default {
namespace CellChemistry {

using namespace SimPT_Sim;

class SmithPhyllotaxis
{
public:
        SmithPhyllotaxis(const CoreData& cd);

        void Initialize(const CoreData& cd);

        void operator()(Cell* cell, double* dchem);

private:
        double Complex_PijAj(Cell* here, Cell* nb, Wall* w);

private:
        CoreData m_cd;                 

        double m_rho_IAA;   // IAA production
        double m_mu_IAA;    // IAA decay
        double m_k_IAA;     // IAA saturation

        double m_rho_PIN0;  // PIN base production
        double m_rho_PIN;   // PIN production
        double m_mu_PIN;    // PIN decay
        double m_k_PIN;     // PIN saturation
};

} // namespace
} // namespace

#endif // include guard