A cell wall, runs between cell corner points and consists of wall elements. More...

#include <Wall.h>

Inheritance diagram for SimPT_Sim::Wall:

Collaboration diagram for SimPT_Sim::Wall:

Public Member Functions
Cell *	GetC1 () const

Cell *	GetC2 () const

std::vector< Edge >	GetEdges () const

unsigned int	GetIndex () const

std::array< double, 3 >	GetInfluxVector (Cell *c) const

double	GetLength () const
	Returns (and calculates, if length marked as dirty) the length along all nodes.

Node *	GetN1 () const

Node *	GetN2 () const

std::array< double, 3 >	GetWallVector (Cell *c) const

bool	IncludesEdge (const Edge &edge) const
	Checks whether edge is part of this wall. More...

bool	IncludesNode (const Node *node) const
	Checks whether edge is part of this wall. More...

bool	IsAtBoundary () const
	Checks whether a wall is at the boundary of the mesh. More...

bool	IsIntersectingWithDivisionPlane (const std::array< double, 3 > &p1, const std::array< double, 3 > &p2) const

bool	IsSam () const
	True if the Wall adheres to the SAM (shoot apical meristem)

std::ostream &	Print (std::ostream &os) const

virtual void	ReadPtree (boost::property_tree::ptree const &wall_pt)

void	SetC1 (Cell *c)

void	SetC2 (Cell *c)

void	SetLengthDirty () const
	Sets the 'dirty bit' i.e. length will recalculated on first use.

void	SetN1 (Node *n)

void	SetN2 (Node *n)

virtual boost::property_tree::ptree	ToPtree () const
	Convert the wall to a ptree. More...

Public Member Functions inherited from SimPT_Sim::WallAttributes
	WallAttributes (unsigned int num_chem)

	WallAttributes (double rest_length, double rest_length_init, double strength, const std::vector< double > &transporters1, const std::vector< double > &transporters2, WallType::Type wall_type)

void	CycleWallType ()

double	GetRestLength () const

double	GetRestLengthInit () const

double	GetStrength () const

std::vector< double >	GetTransporters1 () const

double	GetTransporters1 (unsigned int ch) const

std::vector< double >	GetTransporters2 () const

double	GetTransporters2 (unsigned int ch) const

WallType::Type	GetType () const

bool	IsAuxinSink () const

bool	IsAuxinSource () const

void	SetRestLength (double l)

void	SetRestLengthInit (double l)

void	SetStrength (double strength)

void	SetTransporters1 (unsigned int ch, double val)

void	SetTransporters1 (const std::vector< double > &transporter)

void	SetTransporters2 (unsigned int ch, double val)

void	SetTransporters2 (const std::vector< double > &transporter)

void	SetType (WallType::Type type)

void	Swap (WallAttributes &src)

Friends
class	Mesh

class	SimPT_Editor::EditableMesh

template<typename T , size_t N>
class	SimPT_Sim::Container::SegmentedVector

Additional Inherited Members
Protected Attributes inherited from SimPT_Sim::WallAttributes
double	m_rest_length

double	m_rest_length_init

double	m_strength

std::vector< double >	m_transporters1

std::vector< double >	m_transporters2

WallType::Type	m_wall_type

Detailed Description

A cell wall, runs between cell corner points and consists of wall elements.

The end points (m_n1, m_n2) of the wall are ordered by their order in the first cell and indicate begin and end point (i.e. are both are included in the wall) If the wall is the boundary wall, then m_c2 (never m_c1) should be the boundary polygon.

Definition at line 48 of file Wall.h.

Member Function Documentation

bool SimPT_Sim::Wall::IncludesEdge ( const Edge & edge ) const

Checks whether edge is part of this wall.

Parameters

edge the edge.

Returns: true iff the wall includes the edge.

Definition at line 130 of file Wall.cpp.

References SimPT_Sim::Cell::GetNodes(), SimPT_Sim::Container::make_const_circular(), and SimPT_Sim::Container::next().

Here is the call graph for this function:

bool SimPT_Sim::Wall::IncludesNode ( const Node * node ) const

Checks whether edge is part of this wall.

Parameters

edge the edge.

Returns: true iff the wall includes the edge.

Definition at line 146 of file Wall.cpp.

References SimPT_Sim::Cell::GetNodes(), and SimPT_Sim::Container::make_const_circular().

Here is the call graph for this function:

bool SimPT_Sim::Wall::IsAtBoundary ( ) const

Checks whether a wall is at the boundary of the mesh.

The cells are used as a reference, so CorrectWall is recommended when necessary.

Returns: True if the wall is at the boundary of the cell complex.

Definition at line 120 of file Wall.cpp.

References SimPT_Sim::Cell::GetIndex().

Here is the call graph for this function:

ptree SimPT_Sim::Wall::ToPtree ( ) const

virtual

Convert the wall to a ptree.

The format of a wall ptree is as follows:

<id>[the index of the wall]</id> <c1>[the index of the first neighbor cell]</c1> <c2>[the index of the second neighbor cell]</c2> <n1>[the index of the first endpoint]</n1> <n2>[the index of the second endpoint]</n2> <length>[the length of the wall]</length> <attributes> WallAttributes::ToPtree() </attributes>

Reimplemented from SimPT_Sim::WallAttributes.

Definition at line 192 of file Wall.cpp.

References SimPT_Sim::Cell::GetIndex(), GetLength(), and SimPT_Sim::WallAttributes::ToPtree().

Here is the call graph for this function:

The documentation for this class was generated from the following files:

Public Member Functions

Friends

Additional Inherited Members

Detailed Description

Member Function Documentation