A cell contains walls and nodes. More...

#include <Cell.h>

Inheritance diagram for SimPT_Sim::Cell:

Collaboration diagram for SimPT_Sim::Cell:

Public Member Functions
void	AddWall (Wall *w)

ptree	GeometryToPtree () const
	Convert the cell geometry to a ptree.

double	GetArea () const
	Return the area of the cell.

std::array< double, 3 >	GetCentroid () const
	Return the centroid position.

double	GetCircumference () const
	Return the circumference along the edges.

GeoData	GetGeoData () const
	Return GeData (area, centroid, area moment of inertia).

int	GetIndex () const
	Return the index.

const std::vector< Node * > &	GetNodes () const
	Access the nodes of cell's polygon.

std::vector< Node * > &	GetNodes ()
	Access the nodes of cell's polygon.

double	GetSignedArea () const
	Return the signed area of the cell.

double	GetSumTransporters (unsigned int ch) const
	Sum transporters at this cell's side of the walls.

const std::list< Wall * > &	GetWalls () const
	Access the cell's walls.

std::list< Wall * > &	GetWalls ()
	Access the cell's walls.

bool	HasBoundaryWall () const

bool	HasEdge (const Edge &edge) const

bool	HasNeighborOfTypeZero () const

bool	IsBoundaryPolygon () const

bool	IsWallNeighbor (Cell *cell) const
	Strict neighbor (you're never your own neighbor)

void	Move (const std::array< double, 3 > &a)
	Strict neighbor (you're never your own neighbor)

bool	MoveSelfIntersects (Node *moving_node, std::array< double, 3 > new_pos)
	Check for self-intersection when moving_node gets displaced.

virtual std::ostream &	Print (std::ostream &os) const

virtual void	ReadPtree (const ptree &cell_pt)

void	ReassignWall (Wall w, Cell to)

void	SetGeoDirty ()

void	SetTransporters (unsigned int chem, double conc)

void	SetTransporters (unsigned int chem, double conc, double lat)

void	SetTransportersLight (unsigned int chem, double conc, double lat)

virtual ptree	ToPtree () const
	Convert the cell (geometry and attributes) to a ptree.

Public Member Functions inherited from SimPT_Sim::CellAttributes
	CellAttributes (unsigned int chem_count)

BoundaryType	GetBoundaryType () const

int	GetCellType () const

double	GetChemical (unsigned int c) const

std::vector< double >	GetChemicals () const

int	GetDivisionCounter ()

int	GetDivisionTime ()

double	GetSolute () const

double	GetStiffness () const

double	GetTargetArea () const

double	GetTargetLength () const

void	IncrementDivisionCounter ()

bool	IsDead () const

bool	IsFixed () const

virtual void	ReadPtree (const boost::property_tree::ptree &cell_pt)

BoundaryType	SetBoundaryType (BoundaryType b)

void	SetCellType (int ct)

void	SetChemical (unsigned int chem, double conc)

void	SetChemicals (std::vector< double > const &chem)

void	SetDead (bool dead)

void	SetDivisionCounter (int div_counter)

void	SetDivisionTime (double div_time)

void	SetSolute (double s)

void	SetStiffness (double stiffness)

void	SetTargetArea (double a)

void	SetTargetLength (double l)

Friends
class	Mesh

class	SimPT_Editor::EditableMesh

template<typename T , size_t N>
class	SimPT_Sim::Container::SegmentedVector

Additional Inherited Members
Protected Attributes inherited from SimPT_Sim::CellAttributes
BoundaryType	m_boundary_type

int	m_cell_type

std::vector< double >	m_chem

bool	m_dead
	For future use, when apoptosis gets set up.

int	m_div_counter
	Keep track of divisions in the cell ancestry.

int	m_div_time

bool	m_fixed

double	m_solute

double	m_stiffness
	Stiffness like in Hogeweg (2000).

double	m_target_area

double	m_target_length

Detailed Description

A cell contains walls and nodes.

The nodes should be ordered in counter-clockwise order. The cell id is an unsigned integer, except for the boundary polygon, which has an id of -1.

Definition at line 48 of file Cell.h.

The documentation for this class was generated from the following files:

Public Member Functions

Friends

Additional Inherited Members

Detailed Description