AddWall(Wall *w) (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
CellAttributes(unsigned int chem_count) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | |
GeometryToPtree() const | SimPT_Sim::Cell | |
GetArea() const | SimPT_Sim::Cell | |
GetBoundaryType() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
GetCellType() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
GetCentroid() const | SimPT_Sim::Cell | |
GetChemical(unsigned int c) const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | |
GetChemicals() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
GetCircumference() const | SimPT_Sim::Cell | |
GetDivisionCounter() (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
GetDivisionTime() (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
GetGeoData() const | SimPT_Sim::Cell | |
GetIndex() const | SimPT_Sim::Cell | inline |
GetNodes() const | SimPT_Sim::Cell | inline |
GetNodes() | SimPT_Sim::Cell | inline |
GetSignedArea() const | SimPT_Sim::Cell | |
GetSolute() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
GetStiffness() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
GetSumTransporters(unsigned int ch) const | SimPT_Sim::Cell | |
GetTargetArea() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
GetTargetLength() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
GetWalls() const | SimPT_Sim::Cell | inline |
GetWalls() | SimPT_Sim::Cell | inline |
HasBoundaryWall() const (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
HasEdge(const Edge &edge) const (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
HasNeighborOfTypeZero() const (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
IncrementDivisionCounter() (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
IsBoundaryPolygon() const (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | inline |
IsDead() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
IsFixed() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
IsWallNeighbor(Cell *cell) const | SimPT_Sim::Cell | |
m_boundary_type (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | protected |
m_cell_type (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | protected |
m_chem (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | protected |
m_dead | SimPT_Sim::CellAttributes | protected |
m_div_counter | SimPT_Sim::CellAttributes | protected |
m_div_time (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | protected |
m_fixed (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | protected |
m_solute (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | protected |
m_stiffness | SimPT_Sim::CellAttributes | protected |
m_target_area (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | protected |
m_target_length (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | protected |
Mesh (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | friend |
Move(const std::array< double, 3 > &a) | SimPT_Sim::Cell | |
MoveSelfIntersects(Node *moving_node, std::array< double, 3 > new_pos) | SimPT_Sim::Cell | |
Print(std::ostream &os) const (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | virtual |
ReadPtree(const ptree &cell_pt) (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | virtual |
ReadPtree(const boost::property_tree::ptree &cell_pt) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | virtual |
ReassignWall(Wall *w, Cell *to) (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
SetBoundaryType(BoundaryType b) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
SetCellType(int ct) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
SetChemical(unsigned int chem, double conc) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | |
SetChemicals(std::vector< double > const &chem) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | |
SetDead(bool dead) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
SetDivisionCounter(int div_counter) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
SetDivisionTime(double div_time) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
SetGeoDirty() (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
SetSolute(double s) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
SetStiffness(double stiffness) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
SetTargetArea(double a) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
SetTargetLength(double l) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
SetTransporters(unsigned int chem, double conc) (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
SetTransporters(unsigned int chem, double conc, double lat) (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
SetTransportersLight(unsigned int chem, double conc, double lat) (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
SimPT_Editor::EditableMesh (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | friend |
SimPT_Sim::Container::SegmentedVector (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | friend |
ToPtree() const | SimPT_Sim::Cell | virtual |
~Cell() (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | inlinevirtual |
~CellAttributes() (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inlinevirtual |