| AddWall(Wall *w) (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
| CellAttributes(unsigned int chem_count) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | |
| GeometryToPtree() const | SimPT_Sim::Cell | |
| GetArea() const | SimPT_Sim::Cell | |
| GetBoundaryType() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| GetCellType() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| GetCentroid() const | SimPT_Sim::Cell | |
| GetChemical(unsigned int c) const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | |
| GetChemicals() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| GetCircumference() const | SimPT_Sim::Cell | |
| GetDivisionCounter() (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| GetDivisionTime() (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| GetGeoData() const | SimPT_Sim::Cell | |
| GetIndex() const | SimPT_Sim::Cell | inline |
| GetNodes() const | SimPT_Sim::Cell | inline |
| GetNodes() | SimPT_Sim::Cell | inline |
| GetSignedArea() const | SimPT_Sim::Cell | |
| GetSolute() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| GetStiffness() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| GetSumTransporters(unsigned int ch) const | SimPT_Sim::Cell | |
| GetTargetArea() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| GetTargetLength() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| GetWalls() const | SimPT_Sim::Cell | inline |
| GetWalls() | SimPT_Sim::Cell | inline |
| HasBoundaryWall() const (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
| HasEdge(const Edge &edge) const (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
| HasNeighborOfTypeZero() const (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
| IncrementDivisionCounter() (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| IsBoundaryPolygon() const (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | inline |
| IsDead() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| IsFixed() const (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| IsWallNeighbor(Cell *cell) const | SimPT_Sim::Cell | |
| m_boundary_type (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | protected |
| m_cell_type (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | protected |
| m_chem (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | protected |
| m_dead | SimPT_Sim::CellAttributes | protected |
| m_div_counter | SimPT_Sim::CellAttributes | protected |
| m_div_time (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | protected |
| m_fixed (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | protected |
| m_solute (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | protected |
| m_stiffness | SimPT_Sim::CellAttributes | protected |
| m_target_area (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | protected |
| m_target_length (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | protected |
| Mesh (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | friend |
| Move(const std::array< double, 3 > &a) | SimPT_Sim::Cell | |
| MoveSelfIntersects(Node *moving_node, std::array< double, 3 > new_pos) | SimPT_Sim::Cell | |
| Print(std::ostream &os) const (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | virtual |
| ReadPtree(const ptree &cell_pt) (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | virtual |
| ReadPtree(const boost::property_tree::ptree &cell_pt) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | virtual |
| ReassignWall(Wall *w, Cell *to) (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
| SetBoundaryType(BoundaryType b) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| SetCellType(int ct) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| SetChemical(unsigned int chem, double conc) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | |
| SetChemicals(std::vector< double > const &chem) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | |
| SetDead(bool dead) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| SetDivisionCounter(int div_counter) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| SetDivisionTime(double div_time) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| SetGeoDirty() (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
| SetSolute(double s) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| SetStiffness(double stiffness) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| SetTargetArea(double a) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| SetTargetLength(double l) (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inline |
| SetTransporters(unsigned int chem, double conc) (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
| SetTransporters(unsigned int chem, double conc, double lat) (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
| SetTransportersLight(unsigned int chem, double conc, double lat) (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | |
| SimPT_Editor::EditableMesh (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | friend |
| SimPT_Sim::Container::SegmentedVector (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | friend |
| ToPtree() const | SimPT_Sim::Cell | virtual |
| ~Cell() (defined in SimPT_Sim::Cell) | SimPT_Sim::Cell | inlinevirtual |
| ~CellAttributes() (defined in SimPT_Sim::CellAttributes) | SimPT_Sim::CellAttributes | inlinevirtual |