VPTissue Reference Manual
PINFlux2.h
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1 #ifndef DEFAULT_CELL_CHEMISTRY_PINFLUX2_H_INCLUDED
2 #define DEFAULT_CELL_CHEMISTRY_PINFLUX2_H_INCLUDED
3 /*
4  * Copyright 2011-2016 Universiteit Antwerpen
5  *
6  * Licensed under the EUPL, Version 1.1 or as soon they will be approved by
7  * the European Commission - subsequent versions of the EUPL (the "Licence");
8  * You may not use this work except in compliance with the Licence.
9  * You may obtain a copy of the Licence at: http://ec.europa.eu/idabc/eupl5
10  *
11  * Unless required by applicable law or agreed to in writing, software
12  * distributed under the Licence is distributed on an "AS IS" basis,
13  * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14  * See the Licence for the specific language governing
15  * permissions and limitations under the Licence.
16  */
22 #include "sim/CoreData.h"
23 
24 namespace SimPT_Sim {
25 class Cell;
26 class Wall;
27 }
28 
29 namespace SimPT_Default {
30 namespace CellChemistry {
31 
32 using namespace SimPT_Sim;
33 
37 class PINFlux2
38 {
39 public:
41  PINFlux2(const CoreData& cd);
42 
44  void Initialize(const CoreData& cd);
45 
47  void operator()(Cell* cell, double* dchem);
48 
49 private:
51  double SumFluxFromWalls(Cell* cell);
52 
54  double Flux(Cell* this_cell, Cell* adjacent_cell, Wall* w);
55 
56 private:
57  CoreData m_cd;
58  double m_aux_breakdown;
59  double m_k1;
60  double m_k2;
61  double m_km;
62  double m_kr;
63  double m_r;
64 };
65 
66 } // namespace
67 } // namespace
68 
69 #endif // end_of_include_guard
Core data with mesh, parameters, random engine and time data.
Definition: CoreData.h:38
A cell contains walls and nodes.
Definition: Cell.h:48
Core data used during model execution.
Namespace for components of the Default model group.
Namespace for the core simulator.
Slightly different PINFlux model for cell chemistry.
Definition: PINFlux2.h:37
A cell wall, runs between cell corner points and consists of wall elements.
Definition: Wall.h:48