VPTissue Reference Manual
cell2cell_transport/SmithPhyllotaxis.h
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1 #ifndef DEFAULT_CELL_TO_CELL_TRANSPORT_SMITHPHYLLOTAXIS_H_INCLUDED
2 #define DEFAULT_CELL_TO_CELL_TRANSPORT_SMITHPHYLLOTAXIS_H_INCLUDED
3 /*
4  * Copyright 2011-2016 Universiteit Antwerpen
5  *
6  * Licensed under the EUPL, Version 1.1 or as soon they will be approved by
7  * the European Commission - subsequent versions of the EUPL (the "Licence");
8  * You may not use this work except in compliance with the Licence.
9  * You may obtain a copy of the Licence at: http://ec.europa.eu/idabc/eupl5
10  *
11  * Unless required by applicable law or agreed to in writing, software
12  * distributed under the Licence is distributed on an "AS IS" basis,
13  * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14  * See the Licence for the specific language governing
15  * permissions and limitations under the Licence.
16  */
22 #include "sim/CoreData.h"
23 #include <vector>
24 
25 namespace SimPT_Sim { class Wall; }
26 
27 namespace SimPT_Default {
28 namespace CellToCellTransport {
29 
30 using namespace SimPT_Sim;
31 
37 public:
39  SmithPhyllotaxis(const CoreData& cd);
40 
42  void Initialize(const CoreData& cd);
43 
45  void operator()(Wall* w, double* dchem_c1, double* dchem_c2);
46 
47 private:
48  CoreData m_cd;
49  double m_D;
50  double m_T;
51  double m_k_T;
52  double m_c;
53 };
54 
55 } // namespace
56 } // namespace
57 
58 #endif // end_of_include_guard
Core data with mesh, parameters, random engine and time data.
Definition: CoreData.h:38
Core data used during model execution.
Namespace for components of the Default model group.
Namespace for the core simulator.
Cell to cell passive & active transport of IAA & PIN in the phyllotaxis model of Richard Smith...
A cell wall, runs between cell corner points and consists of wall elements.
Definition: Wall.h:48