TransportEquations.h

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#ifndef RDAT_EQUATIONS_H_INCLUDED
#define RDAT_EQUATIONS_H_INCLUDED
/*
 * Copyright 2011-2016 Universiteit Antwerpen
 *
 * Licensed under the EUPL, Version 1.1 or  as soon they will be approved by
 * the European Commission - subsequent versions of the EUPL (the "Licence");
 * You may not use this work except in compliance with the Licence.
 * You may obtain a copy of the Licence at: http://ec.europa.eu/idabc/eupl5
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the Licence is distributed on an "AS IS" basis,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the Licence for the specific language governing
 * permissions and limitations under the Licence.
 */
#include "model/ComponentInterfaces.h"
#include "sim/CoreData.h"

#include <vector>

namespace SimPT_Sim {

class Mesh;
class Sim;

class TransportEquations
{
public:
        TransportEquations(const CoreData& cd);

        void GetDerivatives(std::vector<double> &derivs) const;

        int GetEquationCount() const;

        void GetVariables(std::vector<double> &values) const;

        void Initialize(const CoreData& cd);

        void SetVariables(std::vector<double> const &values) const;

private:
        CoreData                          m_cd;                    
        CellChemistryComponent            m_cell_chemistry;
        int                               m_effective_nchem;
        int                               m_equation_count;
        Mesh*                             m_mesh;                  
        CellToCellTransportComponent      m_cell2cell_transport;
        WallChemistryComponent            m_wall_chemistry;
};

} // namespace

#endif // end-of-include-guard